Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3121 ATGAAGGTATCATGTTACACTCCACATGTTAACATACCTCAAGAAACAAGGTTTGGTTCACAAGAAGCTCGTGTTTTTCTTCAAAACTGCAACAATTTCAAGCAACTGAAACAAATCCATGCTAGAATAATCCGTTTTGGTCTCACCCATGACCAATTACTTATTAGAAAGCTATGTCAAATTTCTTCATCATATGGTAAAATGAATTATGCTACTTTGGTATTTGATCAACTTAATGATCCTGATATATTTACTTGGAATGTTATGATTAGAGCTTATAATACAAGTGGGTTACCTGAAAAGGGTATTTTTTTATTCAAGGATATGATTTGTTGTGGTTTTTTACCTGATAAATTTTCATACCCTTTTGTTATAAATGCTTGTATTGCTTCTGGTGTTATTGATTTTGGTAGATTAATACATGGTTTTGCAATAAAAATGGGATTTTGGAGTGATGTTTATGTGCAGAATAATATGATGAATCTTTACTTTAAGATTGGTGGGGATGTTGATGATGGGTGGAAGGTGTTTGATAAAATGCGTGTGAGGAATGTGGTTTCTTGGACGACTGTGATTGCCGGGCTTGTTGCGTGTGGAAAATTGGATGCTGCGAGGGAAGTATTTGAGAGGATGCCGTCGAAGAATGTTGTTTCGTGGTCGGCGATGATTGATGGGTATGTGAAAAATGATAACCCGATTAAGGCTTTTGATTTGTTTGAAAGGATGCTGATTGATGATGTGAGGCCAAATGAGTTTACGTTGGTGAGCTTGATCAAAGCTTGTACTGATTTTGGTAGTCTCAAATTGGGTAGACGGATGCATGATTTTGCGTTGAAGAATGGTTTTGAGCTTGGACCGTTTTTGGGTACTGCTCTTATTGATATGTATAGCAAATGTGGTAGTTTAGATGATGCTGTTAAAGTGTTTGGTTTAATGGAAGTGAGAAACTTGGCTACTTGGAATACAATGCTTACTAGCTTCGGTGTGCACGGGTTTGGGAATGAAGTGCTGGCACTTTTTGAAGAAATGGAGAAGGCCGGAGTAGTTCCTGATGCTATCACTTTTGTAGGTGTTTTGAGTGCTTGTCTTCAAATGAATGATCTGGAACAAGGCCAGAAGTATTTCAGTCTCATGACAGAACATTATGGTATAACACCTATCTTGGAACACTATACATGCATGGTTGGACTATATACTCGTTCTAATGAATTGAATGAGATTCGCACATTAGGGGACACAATGTCATTGTCATTGAAAGCAAATCATAATGTTGCAGAATTGCTACAAGAGAGTAAACACACTGGTTTTGATGACATGGAGAAACTCATACACGAGCATTACAGGGGTTCAGATTTATCAGAATTGGATTTAGAATGTCACAAGGTGTATTGGATCCAATTCTTTGCGAGTCCATTATTGAAGAAGAACCTATATTGTTCTTCTGTTTCTCTGTTCTGCATCATCAATAGTAGTAGCAGAAGAAGAAGGAACAGGAATTTGATGGCTTTGAACAATAGAACCAATAATTACCTGCACCACTTGGAATCAGCGAAGTTTCTTCCATCTGGTGCTGGCCGCATTCCTCATTTGAACGCTGTCACTCTTGGCGAATCTCTTGCTACTGAAGAGGACAGTTTTGTTCTCCCAAACAAATAA 1656 0.378 MKVSCYTPHVNIPQETRFGSQEARVFLQNCNNFKQLKQIHARIIRFGLTHDQLLIRKLCQISSSYGKMNYATLVFDQLNDPDIFTWNVMIRAYNTSGLPEKGIFLFKDMICCGFLPDKFSYPFVINACIASGVIDFGRLIHGFAIKMGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDKMRVRNVVSWTTVIAGLVACGKLDAAREVFERMPSKNVVSWSAMIDGYVKNDNPIKAFDLFERMLIDDVRPNEFTLVSLIKACTDFGSLKLGRRMHDFALKNGFELGPFLGTALIDMYSKCGSLDDAVKVFGLMEVRNLATWNTMLTSFGVHGFGNEVLALFEEMEKAGVVPDAITFVGVLSACLQMNDLEQGQKYFSLMTEHYGITPILEHYTCMVGLYTRSNELNEIRTLGDTMSLSLKANHNVAELLQESKHTGFDDMEKLIHEHYRGSDLSELDLECHKVYWIQFFASPLLKKNLYCSSVSLFCIINSSSRRRRNRNLMALNNRTNNYLHHLESAKFLPSGAGRIPHLNAVTLGESLATEEDSFVLPNK* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3121 551 TIGRFAM PPR: pentatricopeptide repeat domain 84 117 IPR002885 -
Mal3g3121 551 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Mal3g3121 551 TIGRFAM PPR: pentatricopeptide repeat domain 290 316 IPR002885 -
Mal3g3121 551 TIGRFAM PPR: pentatricopeptide repeat domain 186 216 IPR002885 -
Mal3g3121 551 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Mal3g3121 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 214 IPR002885 -
Mal3g3121 551 Pfam PPR repeat family 81 128 IPR002885 -
Mal3g3121 551 Pfam PPR repeat family 316 362 IPR002885 -
Mal3g3121 551 Pfam PPR repeat family 214 261 IPR002885 -
Mal3g3121 551 PANTHER BNAA06G32750D PROTEIN 16 424 - -
Mal3g3121 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Mal3g3121 551 Gene3D Tetratricopeptide repeat domain 267 453 IPR011990 GO:0005515
Mal3g3121 551 Gene3D Tetratricopeptide repeat domain 168 266 IPR011990 GO:0005515
Mal3g3121 551 Gene3D Tetratricopeptide repeat domain 20 167 IPR011990 GO:0005515
Mal3g3121 551 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 16 424 - -
Mal3g3121 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Mal3g3121 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3121 Mal-Chr3 106430193 106432742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3121 26 415 Glycoside Hydrolase AT3G49170 26.866 6.36e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3121 - - gmx:100789790 658.292