Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3119 ATGGGCACAAGCAGCGACCCAACCCAAGACAACTCCGACGAACAACAAAAACGTTCCGAGATCTACACCTACGAAGCACCATGGCACATCTACGCTATGAACTGGAGCGTCCGTCGCGACAAAAAATATCGCCTCGCTATCGCTTCTCTCTTAGAACAATACCCTAACCGCGTCGAAATCGTTCAACTGGACGACACCACCGGCGAAATCAAATCCGACCCAAATCTCTCCTTCGAACATCCTTACCCACCCACCAAATCCATCTTCATCCCTGACAAAGATTGCCACCGCCCTGACCTCCTCGCTACCTCTTCCGATTTTCTCCGTATTTGGCGGATCTCCGATTCCGACGAGTCAGCGTCGGAGTCTCGTGGCGTCGAACTCAAAAGTCTTCTCAATGGTAACAAAAACAGTGAATATTGTGGCCCAATTACTTCTTTTGATTGGAATGAAGCTGAACCGCGTAGAATCGGTACTTCGAGTATTGACACAACGTGTACGATTTGGGATATTGAGAAAGAAACTGTTGATACGCAGTTAATTGCGCATGATAAAGAGGTTTATGATATTGCTTGGGGTGGTGTTGGTGTTTTTGCGTCGGTTTCTGCTGATGGGTCGGTTAGGGTTTTTGATTTACGTGATAAGGAACATTCTACGATAATTTACGAAAGTTCTGAACCTGATACACCGTTGGTTAGGCTAGGTTGGAATAAACAAGATCCTAGGTATATGGCGACAATTATAATGGATTCTGCTAAGGTTGTTGTGCTGGATATTCGTTTTCCGACGCTACCGGTGGTGGAGTTGCAGAGACATCAAGCTAGTGTGAATGCGATTGCGTGGGCGCCGCATAGTTCGTGTCATATTTGTACTGCTGGTGATGATTCTCAGGCGTTGATTTGGGATCTTTCTTCAATGGGGCAGCCTGTTGAAGGTGGGCTTGATCCTATTTTGGCTTATACTGCTGGTGCTGAAATTGAACAGCTTCAATGGTCTTCTTCACAGCCTGATTGGGTTGCTATTGCTTTTTCGACTAAGCTTCAGATTCTTAGGGTGTGA 1059 0.4627 MGTSSDPTQDNSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDTTGEIKSDPNLSFEHPYPPTKSIFIPDKDCHRPDLLATSSDFLRIWRISDSDESASESRGVELKSLLNGNKNSEYCGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3119 352 SUPERFAMILY WD40 repeat-like 56 310 IPR036322 GO:0005515
Mal3g3119 352 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 305 - -
Mal3g3119 352 Pfam WD domain, G-beta repeat 269 302 IPR001680 GO:0005515
Mal3g3119 352 Pfam WD domain, G-beta repeat 180 211 IPR001680 GO:0005515
Mal3g3119 352 PANTHER WD REPEAT CONTAINING PROTEIN 12 352 IPR045159 -
Mal3g3119 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 305 IPR001680 GO:0005515
Mal3g3119 352 ProSitePatterns Trp-Asp (WD) repeats signature. 289 303 IPR019775 -
Mal3g3119 352 SMART WD40_4 262 302 IPR001680 GO:0005515
Mal3g3119 352 SMART WD40_4 125 170 IPR001680 GO:0005515
Mal3g3119 352 SMART WD40_4 173 211 IPR001680 GO:0005515
Mal3g3119 352 Gene3D - 5 351 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3119 Mal-Chr3 106415093 106416151 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3119 K11805 - gmx:100779365 681.789