LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal3g3118	ATGGCTTCGGCTACTTTCTCTGTAGCCAACCCTGCTCTTAAGGTAAATGGTAAAGGCTTTTCTGAATTCTCTGGCCTACGCAACTCATCAGGATATCTTCCCTTTTCTAGAAAAACTTTAGATGACTTTCATTCTGTCATTTCCTTCCAAACCAATGCAGTTGGAAGCAGTAGAAGATCCAAGAAAGGTGTTGTAGTGGAAGCAAAAATTAATGTAGCCATAAACGGATTTGGAAGGATTGGAAGGAATTTCTTGAGATGTTGGCATGGTCGTAAGGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGAGGTGTAAAGCAAGCCTCTCACCTTCTCAAGTATGATTCCACACTTGGAATCTTTGATGCTGATGTTAAGCCTGTTGGCACTGATGGTATCTCTGTTGATGGAAAGGTTATCAAAGTTGTCTCTGACCGTAACCCTGCCAACCTTCCTTGGGGGGAGTTGGGGATAGATTTGGTGATTGAAGGAACTGGAGTGTTTGTGGACAGAGAAGGTGCAGGGAAGCACATTACAGCAGGAGCTAAGAAGGTACTCATCACAGCCCCTGGAAAAGGAGATATCCCAACTTATGTGGTTGGTGTCAATGCTGATGGTTACACCCATGCTGATGATATCATCAGCAATGCTTCTTGCACCACTAACTGCCTTGCTCCCTTTGTCAAGGTCCTTGATCAGAAATTTGGTATCATCAAGGGTACCATGACTACCACTCACTCCTACACCGGTGACCAAAGGCTTCTTGACGCTAGCCACCGTGATCTAAGGCGTGCAAGAGCAGCAGCTCTTAACATTGTGCCAACTTCAACAGGAGCGGCAAAGGCAGTGGCCCTTGTCCTCCCATCACTCAAAGGCAAGCTCAACGGTATTGCGCTTCGTGTGCCAACACCAAACGTTTCGGTGGTGGACCTCGTTGTTCAAGTCTCAAAGAAGACATTTGCTGAAGAAGTGAATGAGGCTTTCAGAGACAGTGCAGCCAAGGAGCTGAGTGGTATTCTCTCAGTTTGTGATGAGCCACTTGTGTCTGTGGATTTTAGGTGCACTGATGTGTCCTCAACCGTTGATTCGTCGTTGACAATGGTTATGGGAGATGACATGGTGAAGGTCATTGCTTGGTATGATAATGAGTGGGGTTACTCACAAAGGGTTGTTGATTTGGCTGACATTGTTGCCAATAACTGGAAGTGA	1215	0.4593	MASATFSVANPALKVNGKGFSEFSGLRNSSGYLPFSRKTLDDFHSVISFQTNAVGSSRRSKKGVVVEAKINVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWGELGIDLVIEGTGVFVDREGAGKHITAGAKKVLITAPGKGDIPTYVVGVNADGYTHADDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRDSAAKELSGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK*	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal3g3118	404	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	338	353	IPR020831	GO:0016620
	Mal3g3118	404	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	242	258	IPR020831	GO:0016620
	Mal3g3118	404	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	215	233	IPR020831	GO:0016620
	Mal3g3118	404	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	298	315	IPR020831	GO:0016620
	Mal3g3118	404	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	179	192	IPR020831	GO:0016620
	Mal3g3118	404	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	1	404	-	-
	Mal3g3118	404	TIGRFAM	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I	71	394	IPR006424	GO:0006006\|GO:0016620\|GO:0050661\|GO:0051287
	Mal3g3118	404	Gene3D	Dihydrodipicolinate Reductase; domain 2	220	384	-	-
	Mal3g3118	404	SMART	gp_dh_n_7	70	221	IPR020828	GO:0051287
	Mal3g3118	404	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	221	383	-	-
	Mal3g3118	404	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	70	172	IPR020828	GO:0051287
	Mal3g3118	404	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2	1	404	IPR020831	GO:0016620
	Mal3g3118	404	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	226	382	IPR020829	GO:0016620
	Mal3g3118	404	Gene3D	-	72	396	-	-
	Mal3g3118	404	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	69	237	IPR036291	-
	Mal3g3118	404	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	219	226	IPR020830	GO:0016620

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal3g3118	Mal-Chr3	106386673	106389980	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal3g3118	K05298		-	rcu:8273055	684.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal3g3118	3	106386673	106389980	Mal3g3118	3	106386673	106389980	ECH