Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3117 ATGAGTTCTTCATTATGGGCTCTGTGTTTGATTTTAGCATCATTAGTTTGTTCTTCATTCTGTGCTCCTCCAAGGAAGCCAGTGGATGTACCATTTGGCAGAAACTATTACCCAACTTGGGCTTTTGATCATATCAAATACTTCAATGGTGGTTCTGAAATTCAGCTTCATCTTGATAAGTATACCGGTACTGGATTTCAGTCCAAAGGTTCATACTTGTTTGGTCATTTCAGTATGAACATTAAGATGGTTCCTGGTGATTCAGCTGGAACAGTAACTGCTTTCTATCTATCTTCACAAAATGCTGAGCATGATGAGATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTGTTTACTGGTGGCCAAGGTAACAAAGAACAAAGGATCTTTCTATGGTTTGATCCAACAAAAGAGTTTCACAGATACTCCATTCTATGGAACATGTACCAGATTGTATTTTTTGTGGATGATGTACCAATTAGAGTGTTCAAGAACAGCAAGGACTTAGGAGTGAAATTTCCATTTGACCAACCAATGAAAATATACAACAGTTTATGGAATGCAGATGATTGGGCAACAAGAGGTGGATTAGAGAAAACAGATTGGTCAAAAGCACCATTCATAGCTGGTTACAAAAGTTTCCACATTGATGGTTGTGAATCATCTGTTAATGCAAAATTCTGTGCAACTCAAGGCAAAAGATGGTGGGATCAACCTGAATTTCGTGATCTTGATGCTGCTCAATGGCGTAGACTAAGATGGGTGCGTCAAAAATACACAAGTTACAACTATTGCACTGATAGGAAACGTTTGCCTCAAATTCCACCTGAATGCAAAAGAGACCGTGACATATAA 882 0.3832 MSSSLWALCLILASLVCSSFCAPPRKPVDVPFGRNYYPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGQGNKEQRIFLWFDPTKEFHRYSILWNMYQIVFFVDDVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAGYKSFHIDGCESSVNAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTSYNYCTDRKRLPQIPPECKRDRDI* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3117 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 291 IPR013320 -
Mal3g3117 293 CDD GH16_XET 27 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mal3g3117 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Mal3g3117 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 291 IPR044791 GO:0004553
Mal3g3117 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2 291 - -
Mal3g3117 293 Pfam Glycosyl hydrolases family 16 33 213 IPR000757 GO:0004553|GO:0005975
Mal3g3117 293 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Mal3g3117 293 PIRSF EndGlu_transf 1 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mal3g3117 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 220 IPR000757 GO:0004553|GO:0005975
Mal3g3117 293 Gene3D - 18 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3117 Mal-Chr3 106352499 106359218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3117 7 293 Glycoside Hydrolase AT5G13870 80.139 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3117 K08235 - gmx:547775 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3117 3 106352499 106359218 Mal3g3117 3 106352499 106359218 ECH