Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3116 ATGAAAATGGGTTTTACATTCTTGATTATGTCTATAATTTTTTCGTCTCTAACATCCGCGGCTTTGTGCGCCACCCCGCCAAAGCCAGTGGATGTACCTTTTGGTCGAAACTACGTACCCACTTGGGCTTTTGATCATATCAAATACTTCAAGGAAGGTTCTGAGATTGAACTTCTTCTTGATAAGTACACTGGTACTGGCTTTCAATCTAAAGGATCATATTTGTTTGGTCACTTCAGCATGAACATAAAGATGGTTCCCGGTGATTCAGCTGGCACAGTCACCGCTTTCTATTTATCTTCCCAAAATGCTGAGCATGATGAAATAGATTTTGAGTTTTTAGGTAACAGAACAGGACAACCTTATATTTTACAAACAAATGTGTTCACTGGTGGCCAAGGTAATAGAGAACAAAGAATTTTTCTCTGGTTTGATCCTACAAAAGCCTACCATAGATACTCCGTTCTATGGAACATGCATCAAATTGTGTTCTTTGTGGACAATATCCCAATCAGGGTGTTCAAAAACAGCAAGCATTTGGGAGTGAAATTTCCATTTGATCAACCAATGAAGGTATACAATAGTTTATGGAATGCAGATGATTGGGCTACAAGAGGTGGATTGGAGAAAACAGATTGGTCAAAAGCACCATTCATAGCTGGTTACAAAAGTTTCCACATTGATGGTTGTGAATCCTCTGTTAATGCAAAGTACTGTGCAACACAAGGCAAAAAATGGTGGAATCAACCTGAGTTTCGTGATCTTGATGCAGCTCAATGGAAAAGGATAAAGTGGGTTCGTAAGAAATTTACCATTTACAATTACTGCACTGATAGAAAACGTTTCCCTCAAATTCCTGCTGAATGTAGAAGAGACCGTGACATTTAA 888 0.3874 MKMGFTFLIMSIIFSSLTSAALCATPPKPVDVPFGRNYVPTWAFDHIKYFKEGSEIELLLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGQGNREQRIFLWFDPTKAYHRYSVLWNMHQIVFFVDNIPIRVFKNSKHLGVKFPFDQPMKVYNSLWNADDWATRGGLEKTDWSKAPFIAGYKSFHIDGCESSVNAKYCATQGKKWWNQPEFRDLDAAQWKRIKWVRKKFTIYNYCTDRKRFPQIPAECRRDRDI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3116 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 293 IPR013320 -
Mal3g3116 295 PIRSF EndGlu_transf 1 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mal3g3116 295 CDD GH16_XET 29 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mal3g3116 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 222 IPR000757 GO:0004553|GO:0005975
Mal3g3116 295 ProSitePatterns Glycosyl hydrolases family 16 active sites. 108 118 IPR008263 GO:0004553|GO:0005975
Mal3g3116 295 Pfam Glycosyl hydrolases family 16 35 215 IPR000757 GO:0004553|GO:0005975
Mal3g3116 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 289 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Mal3g3116 295 Gene3D - 19 295 - -
Mal3g3116 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 8 293 IPR044791 GO:0004553
Mal3g3116 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 8 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3116 Mal-Chr3 106347938 106349856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3116 3 295 Glycoside Hydrolase AT5G13870 76.792 3.85e-177 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3116 K08235 - gmx:100779122 542.347