Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3104 ATGGCTTCTTTTCTCCCATCTCCACACCCCATTTCCACACCCCCCTTCACCAAACTCACCTCCCCCCCAAAACCATGCCACCTCTTCATCCTCAACCGCCCTTTTCACCACAAAACCATAAAAAAACTACTTTTTACACCACCCTTTTACCCCCTCAATGCAGTCTACACACAAGGACTCTATGCCCCTTCTTCACCCTCCATAACTGACAAAATTGACCCTGAAAATGACCCCATTTCAATCCTCAATGAACGAATTCGTCGTGAATACGGCAAAAGAGAGGTTTCAAGGAAAGTTATGGACTCTGAGGAAGCTGATAAGTATATAAAAATGGTGAAGGAACAACAGCAGAGGGGGCTGCAGAAGCTTAAGGGTGATAGAGAGGGTAAAGATGGTACCTTTAGTTATAAGGTAGACCCTTATACACTTCGTTCTGGAGACTATGTTGTGCATAAGAAAGTTGGTATTGGTAGGTTTGTTGGGATTAAATTCGATGTTTCGAAGAATTCGATTGAATCTACTGAGTATGTTTTTATTGAGTATGCTGATGGAATGGCTAAGCTTCCTGTTAAACAGGCTTCTAAAATGCTCTATAGATATAGTCTTCCAAATGAAAACAAAAAGCCTAGGACATTGAGCAAGTTGAATGATACCAGTGCTTGGGAGAAAAGAAAGACTAAAGGGAAGGTTGCCATACAGAAGATGGTTGTTGATTTGATGGAACTTTATCTACATAGGCTTAAACAAAGAAGGCCTCCCTATCCTATGAGTCCTGTCGTGGCTGAATTTGCAGCGAAATTTCATTATGAACCTACGCCGGATCAGAAACAGGCTTTTATCGATGTTGAGAAAGATTTGACGGAGCGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCGATGCGTGCCATCCACTGTGTTGTCTCAGCTAAAAAGCAAGCAATGGTTCTAGCACCGACAATAGTTCTAGCAAAACAACATTTTGATGTTATATCAGAGCGCTTTTCTGTATATCCTGATATTAAAGTTGGGCTTCTAAGCAGGTTTCAGACCAGATCAGAGAAGGAAGTATACTTGGAAATGATTAAGAATGGTGACCTAGATATTATTGTCGGAACTCACTCACTCCTAGGAAACCGTGTTGTTTATAGCAATCTTGGCCTGCTTGTGGTTGATGAGGAGCAGAGGTTTGGTGTCAACCAGAAGGAGAGGATTGCTTCTTTTAAAACTTCAGTGGACGTGCTTACTTTATCTGCAACACCTATACCACGGACTCTTTATTTAGCATTAACTGGATTTCGGGATGCTAGTTTAATTTCAACTCCACCTCCAGAAAGAGTTCCTATCAAGACTCAGCTTTCATCATTCAGTAAGGACAAAGTAATATCAGCTATCAAGTATGAGCTGGACCGAAGTGGTCAAGTTTTCTATGTTCTACCACGTATTAAAGGACTTGAAGAAGCAATGGAATTTCTTGAAGAGGCATTCCCCGATGTGGAAATAGCTGTTGCCCATGGGAAGCAATACTCAAAACAATTGGAGGATACTATGGAGAAGTTTGCTCTAGGTGAAATTAAAATCCTCATAAGCACAAATATAGTTGAAAGTGGGCTTGATATTCAAAATGCAAACACCATCATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGTTGTACCAGTTGCGTGGAAGGGTTGGGCGGGCAGAGAAGGAAGCATATGCATACTTATTTTACCCTGACAAGAATCTGCTCTCTGATCAAGCATTGGAAAGGCTTGCAGCTCTTGAGGAATGCCGTGAACTTGGTCAAGGTTTCCAACTAGCCGAGAGAGACATGGGTATTAGAGGTTTTGGTACTATTTTCGGCGAGCAACAAACAGGAGATGTTGGAAATGTTGGCATTGATCTTTTCTTTGAGATGCTCTTCGAGAGTTTATCCAAGGTTGAAGATCACCGTGTTGTATCAGTTCCTTATCACTCGGTGCAGGTTGACTTAAACATCAATCCTCACCTCCCTTCTGAATACATAAATCATCTCGAGAACCCTATGGAAATAATAAATGAAGCTGAGCGAGTTGCTGAGGAAGACATCTGGAGTCTGATGCAATTTACAGAGAATTTGCGCCGCCAATATGGCAAAGAGCCTCGCCCAATGGAGATTATCTTAAAGAAGCTTTACTTGAGGAGAATGGCAGCTGATATAGGGGTAACCAGAATTTACTCTTCAGGGAAGATAGTGTTTATGAAAACAAACATGAATAAAAAGGTTTTCAAGATGATGACAGAGTCGATGACCTCGGATATATATAAAAATTCATTAGTTCATGAGGGTGACCAAATTAAGGCTGAACTTCTACTAGAGTTACCAAAAGAACAACTTCTTAATTGGATCTTTAATTGCATGGCTGAACTTCATGCTTCACTAGCAGCCCTCATAAAGTACTAG 2475 0.4109 MASFLPSPHPISTPPFTKLTSPPKPCHLFILNRPFHHKTIKKLLFTPPFYPLNAVYTQGLYAPSSPSITDKIDPENDPISILNERIRREYGKREVSRKVMDSEEADKYIKMVKEQQQRGLQKLKGDREGKDGTFSYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVSKNSIESTEYVFIEYADGMAKLPVKQASKMLYRYSLPNENKKPRTLSKLNDTSAWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPMSPVVAEFAAKFHYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAIHCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTRSEKEVYLEMIKNGDLDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVNQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTQLSSFSKDKVISAIKYELDRSGQVFYVLPRIKGLEEAMEFLEEAFPDVEIAVAHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRAEKEAYAYLFYPDKNLLSDQALERLAALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEDHRVVSVPYHSVQVDLNINPHLPSEYINHLENPMEIINEAERVAEEDIWSLMQFTENLRRQYGKEPRPMEIILKKLYLRRMAADIGVTRIYSSGKIVFMKTNMNKKVFKMMTESMTSDIYKNSLVHEGDQIKAELLLELPKEQLLNWIFNCMAELHASLAALIKY* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3104 824 Pfam Helicase conserved C-terminal domain 473 578 IPR001650 -
Mal3g3104 824 Gene3D - 146 206 - -
Mal3g3104 824 Gene3D - 670 818 IPR037235 -
Mal3g3104 824 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 448 IPR014001 -
Mal3g3104 824 SMART helicmild6 495 579 IPR001650 -
Mal3g3104 824 SMART ultradead3 267 459 IPR014001 -
Mal3g3104 824 CDD DEXHc_TRCF 257 450 - -
Mal3g3104 824 Gene3D - 207 450 IPR027417 -
Mal3g3104 824 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 14 795 - -
Mal3g3104 824 SMART CarD_TRCF_2 142 244 IPR003711 -
Mal3g3104 824 Pfam DEAD/DEAH box helicase 293 431 IPR011545 GO:0003676|GO:0005524
Mal3g3104 824 SUPERFAMILY CarD-like 137 206 IPR036101 -
Mal3g3104 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 593 IPR027417 -
Mal3g3104 824 Pfam TRCF domain 675 764 IPR005118 GO:0006281
Mal3g3104 824 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 14 795 - -
Mal3g3104 824 Pfam CarD-like/TRCF domain 143 243 IPR003711 -
Mal3g3104 824 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 466 623 IPR001650 -
Mal3g3104 824 Gene3D - 143 657 IPR027417 -
Mal3g3104 824 SUPERFAMILY TRCF domain-like 667 814 IPR037235 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3104 Mal-Chr3 106168504 106177520 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3104 - - gmx:100791900 1317.75