Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2884 ATGAATGTTACCAGAAAGAGAAACTACCATTCAATTTCATCTCCATCACCACCAACAACCACTACACACTCTCCAATTCCAATTCCAATTCCAATTCCACCCTTAGGCAAAACAAAAACCCTCTTCGAAATAATCTCCACAAACCCATCTTTAACCGTCGAAAAATCCCTCGAAGAATCCCAAATCACCATTACCCCACAAGATGTCGAAAATGTCCTCAAACTTTCTTACCGTTTCCCGGCTCAATCGGTTAAATTCTTCCGCTGGGCCGGTCACCGTATTAATCACAACCACACTCCATATGCTTGGAATTTAGTCATTGATATTTTAGGTAAAAACCGTTTATTCGATGCAATGTGGGACGCTGTTAAATCAATGCGGCGCGAGGGTTTGTTGTCACGATCCACTTTCGCGTCAATTTTCGCGAGTTATGTTGATGCTGGTAGAATTGCTGATGCTGTAACTACTTTTGAGGTTATGGATGGGTATGGTTGTGTTAGAGATGTTGTTTCGTTGAATTCGTTGTTGAGTGCTGTTTGTGGGAGTGGGAGAAGTGTTGAAGCTTGTGATTATTTGCAGATTGCCAAGAAATTGGTTAGACCGGATTCGGATACTTATGCTATTTTGATGGAGGGTTTGGAGAGTGATGGGAATGTTGTTGGTGCGAAAGAGACTTTTGCGGAGATGGTTATTGAAATTGGTTGGGATCCGGGGAATGTGGCTGCGTATGATTCGTTTTTGTGTTGTTTGATTAAGGGTAGTGATGGGATTCGTGAGGCGCTTAAGTTTTTTGATTCGTTGAGAGATAGGAGATGTTATCCGGGGATTAGGTTTTTTAGGGTTGCGTTGGATGAGTGTGTTAGGTTTCATGATATAGGGAGGGCAGAGTTTTTTTGGGAGGTTATGATGGGGAAAACTAAGTTGCAGCCGACGACGGCTATGTATAATTCGATGATTGCTTTGTATTGTTATCATGGGGATATCGACGCTGCTACGAAGATGCTTGATGGGATGGTTTGCAAAGGGGCGTTTCCGGATTCGCTTACTTATAATTTGTTGTTTAGGTTTTTGATTAAGGGGAGGAAATTAAGGGAGGCGTCGAGGGTCTTTGTTGAGATGGTGAAAAATGAGTGTGTGCCGGATCAGCTTAATTGTGATGCGGCTGTTAGGGTTTATTTGGATAATGGGGATCCTGTTATGGCTATAAAAGTTTGGAAGTGTTTGGTTGATAATTACCGTGAGGAATTGGAGGGCACTGCAAATTTGTTGGTTGTAGGGCTTCGAGATAATGATAGGGTCCCCGAAGCAGTTAAGTATGCTGAACATATTATTGGAAGAGGAATCAAGTTGACTTCTTCGACATTGTCGAAGTTGAGACAAAGCCTCGTCAAAGAAAGAAAAGAATTCGTGTATGACGAACTTATAGCGAAGTGGAAAGCGGCCTATTAG 1449 0.4231 MNVTRKRNYHSISSPSPPTTTTHSPIPIPIPIPPLGKTKTLFEIISTNPSLTVEKSLEESQITITPQDVENVLKLSYRFPAQSVKFFRWAGHRINHNHTPYAWNLVIDILGKNRLFDAMWDAVKSMRREGLLSRSTFASIFASYVDAGRIADAVTTFEVMDGYGCVRDVVSLNSLLSAVCGSGRSVEACDYLQIAKKLVRPDSDTYAILMEGLESDGNVVGAKETFAEMVIEIGWDPGNVAAYDSFLCCLIKGSDGIREALKFFDSLRDRRCYPGIRFFRVALDECVRFHDIGRAEFFWEVMMGKTKLQPTTAMYNSMIALYCYHGDIDAATKMLDGMVCKGAFPDSLTYNLLFRFLIKGRKLREASRVFVEMVKNECVPDQLNCDAAVRVYLDNGDPVMAIKVWKCLVDNYREELEGTANLLVVGLRDNDRVPEAVKYAEHIIGRGIKLTSSTLSKLRQSLVKERKEFVYDELIAKWKAAY* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2884 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 274 IPR002885 -
Mal2g2884 482 MobiDBLite consensus disorder prediction 1 19 - -
Mal2g2884 482 Pfam PPR repeat family 310 356 IPR002885 -
Mal2g2884 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Mal2g2884 482 Pfam PPR repeat 102 131 IPR002885 -
Mal2g2884 482 Gene3D Tetratricopeptide repeat domain 78 235 IPR011990 GO:0005515
Mal2g2884 482 Gene3D Tetratricopeptide repeat domain 255 424 IPR011990 GO:0005515
Mal2g2884 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Mal2g2884 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Mal2g2884 482 MobiDBLite consensus disorder prediction 1 29 - -
Mal2g2884 482 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 18 480 - -
Mal2g2884 482 PANTHER OS02G0711100 PROTEIN 18 480 - -
Mal2g2884 482 TIGRFAM PPR: pentatricopeptide repeat domain 349 381 IPR002885 -
Mal2g2884 482 TIGRFAM PPR: pentatricopeptide repeat domain 136 169 IPR002885 -
Mal2g2884 482 TIGRFAM PPR: pentatricopeptide repeat domain 101 131 IPR002885 -
Mal2g2884 482 TIGRFAM PPR: pentatricopeptide repeat domain 314 346 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2884 Mal-Chr2 38376414 38377862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2884 137 479 Glycosyltransferase AT1G05670 25.072 2.42e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2884 - - pvu:PHAVU_001G231300g 633.639