Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2598 ATGGATTTAAACCAAATCCAAATCGCTTTACGTTGTTGCATACGCTTTCGAACTCTTAAAAATGCGAAATCACTACATTCTCACATAATTAAATCCGGTTATTTTAATCACATGTTTATCTTAAACAACATGATATCTGTTTATGCAAAATGTTCCAGTTTCAGTGATGCACGTAACCTGTTCGACGAAATGCCTCATAGGAACATAGTTTCTTGGACGACGATGGTCTCTGCATTCACCAATTCTGGCATGCCCCGCGAAGCACTTAGACTCTACAATGAGATGATTGATTCAAAAATTGAACAGCCTAATCAGTTCTTGTACTCTGCTGTTCTCAAAGCGTGCGGTCTTGTGAGAAACGTTGAATTGGGAAAGATGGTTCATTATCATATATTTCAATCTAAGTTTGATGTTGACATTGTTTTGGTGAATGCCCTTTTGGATATGTATGTTAAATGTGGGAGCTTGCGGGATGCTCAACGAGTTTTCTGTGAAATTCCGTGTAAAAATGCTACTTCATGGAACACACTCATTTTGGGTCATGCTAAATATGGTTTGATTGATGATGCGATAAAACTGTTTGATAAAATGCCGGAACCTGATATTGTATCTTGGAACAGCATCGTTGCTGGTCTTGTAGATAATGCTAGTTCACGTGCGTTGCAATTTGTTTCTGTGATGCATGCGAAGGGCCTTAAAATGGATGAATTCACATTACCAAATGCCCTCAAAGCTTGCGGTCTTGGTGATGAGTTAACGTTAGGGAGACAGATTCATTGTTATATTATTAAGTCGGGGTTTGAGTCTAGCTGTTATTGTATATCGGCGTTGATTGATATGTATTCGAATTGCAAGTTATTGGGTGAAGCAATGAAGAATTTTGATCAACTCTTAAGGAGCTATCCTGTTTTTCAAAGCTTGCCACTTTGGAATTCAATGCTTTCTGGGTATGTTGCCAATGGAGATTATGTTGAGGCTCTCAGTATGATTTCTCATATGCATCGTTCTGGTGAACGTTTTGATTTTTATACCTTCAGTATTGTTTTAAAGATCTGCATCAACTTCGATAACTTGAGTTTGGCATCTCAAGTGCATGGATTAGTAATCACTAGTGGCTATGAGTTAGATTGTGTTGTTGGGAGCATACTTATTGATCTATATGCAAAACAGGGCAATATTTACAATGCATTAAGATTGTTTGAGAGGTTGCCAGATAAAGATGTTGTGGCTTGGTCTAGTTTGATTGTTGGTTGTGCTAGATTTGGTTCAGATAAGTTAGCCTTTTCCCTTTTCATGGATATGATTCATTTGGGTCTTCAGGTTGATCATTTTGTTATTTCAATTGTGCTAAAAGCTTGTTCAAGTTTGGCATCTCATCAACGTGGCAAGCAAGTTCATTCTTTATGTCTTAAGAAGGGGTATGAATCAGAGGGAGTAATTACAACTGCTCTAATTGATATGTATGCAAAATGTGGTGACATCGAGGATGCCTTAGCTTTGTTTTGTTGTCTTTCGGAAATTGATACCATGAGTTGGACAAGTATTATTGTGGGATGTGCACAGAATGGAAGAGCAGATGAGGCAATTAGTCTTCTGCATAAGATGATAGAATCTGATACAAAGCCAAACAAAATCACTATTCTAGGTGTTCTTACTGCTTGCAGGCATGCTGGCCTAGTTGAAGAGGCATGGGCTGTGTTTAATTCTATTGAAACAAAGCATGGATTGATACCTTGCCCAGAACATTACAATTGTATGGTTGATATACTTGGCCAAGCAGGACGTTTTGAAGAAGCAGAAAAATTGATTAGTGAAATGCCGTTTAAGCCCGACAAAATTATATGGTCTTCCTTGCTTGGTGCCTGTGGAACTTACAAGAACCGACATCTTGCAAATATCGTTGCCGAGCATCTCCTTGCTACCTCACCAGAAGATGTTTCTGTATACATAATGCTGTCAAATGTTTATGCATCTCTTGGAATGTGGGATAGTTTAAGCAAAGTCAGAGAAACTGTAAAAAAAATCGGCAAAAAAGGAGCTGGAAAAAGCTGGATTGAGATCTCAAGTTGA 2070 0.3821 MDLNQIQIALRCCIRFRTLKNAKSLHSHIIKSGYFNHMFILNNMISVYAKCSSFSDARNLFDEMPHRNIVSWTTMVSAFTNSGMPREALRLYNEMIDSKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQSKFDVDIVLVNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGHAKYGLIDDAIKLFDKMPEPDIVSWNSIVAGLVDNASSRALQFVSVMHAKGLKMDEFTLPNALKACGLGDELTLGRQIHCYIIKSGFESSCYCISALIDMYSNCKLLGEAMKNFDQLLRSYPVFQSLPLWNSMLSGYVANGDYVEALSMISHMHRSGERFDFYTFSIVLKICINFDNLSLASQVHGLVITSGYELDCVVGSILIDLYAKQGNIYNALRLFERLPDKDVVAWSSLIVGCARFGSDKLAFSLFMDMIHLGLQVDHFVISIVLKACSSLASHQRGKQVHSLCLKKGYESEGVITTALIDMYAKCGDIEDALALFCCLSEIDTMSWTSIIVGCAQNGRADEAISLLHKMIESDTKPNKITILGVLTACRHAGLVEEAWAVFNSIETKHGLIPCPEHYNCMVDILGQAGRFEEAEKLISEMPFKPDKIIWSSLLGACGTYKNRHLANIVAEHLLATSPEDVSVYIMLSNVYASLGMWDSLSKVRETVKKIGKKGAGKSWIEISS* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2598 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 609 IPR002885 -
Mal2g2598 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Mal2g2598 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 40 83 - -
Mal2g2598 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 83 684 - -
Mal2g2598 689 SUPERFAMILY TPR-like 382 664 IPR011990 GO:0005515
Mal2g2598 689 Pfam PPR repeat 409 438 IPR002885 -
Mal2g2598 689 Pfam PPR repeat 173 199 IPR002885 -
Mal2g2598 689 Pfam PPR repeat 143 167 IPR002885 -
Mal2g2598 689 Pfam PPR repeat 582 606 IPR002885 -
Mal2g2598 689 Pfam PPR repeat 482 504 IPR002885 -
Mal2g2598 689 Pfam PPR repeat 511 538 IPR002885 -
Mal2g2598 689 Pfam PPR repeat 381 407 IPR002885 -
Mal2g2598 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Mal2g2598 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Mal2g2598 689 Gene3D Tetratricopeptide repeat domain 121 214 IPR011990 GO:0005515
Mal2g2598 689 Gene3D Tetratricopeptide repeat domain 360 469 IPR011990 GO:0005515
Mal2g2598 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Mal2g2598 689 PANTHER BNAC03G28070D PROTEIN 40 83 - -
Mal2g2598 689 PANTHER BNAC03G28070D PROTEIN 83 684 - -
Mal2g2598 689 Gene3D Tetratricopeptide repeat domain 484 689 IPR011990 GO:0005515
Mal2g2598 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Mal2g2598 689 TIGRFAM PPR: pentatricopeptide repeat domain 310 339 IPR002885 -
Mal2g2598 689 TIGRFAM PPR: pentatricopeptide repeat domain 173 198 IPR002885 -
Mal2g2598 689 TIGRFAM PPR: pentatricopeptide repeat domain 70 104 IPR002885 -
Mal2g2598 689 TIGRFAM PPR: pentatricopeptide repeat domain 41 70 IPR002885 -
Mal2g2598 689 TIGRFAM PPR: pentatricopeptide repeat domain 583 606 IPR002885 -
Mal2g2598 689 TIGRFAM PPR: pentatricopeptide repeat domain 511 543 IPR002885 -
Mal2g2598 689 Gene3D Tetratricopeptide repeat domain 215 359 IPR011990 GO:0005515
Mal2g2598 689 Gene3D Tetratricopeptide repeat domain 2 120 IPR011990 GO:0005515
Mal2g2598 689 Pfam E motif 625 686 IPR046848 -
Mal2g2598 689 Pfam PPR repeat family 310 352 IPR002885 -
Mal2g2598 689 Pfam PPR repeat family 67 115 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2598 Mal-Chr2 33209477 33211546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2598 1 687 Glycoside Hydrolase AT3G49170 30.372 7.47e-113 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2598 - - mtr:MTR_3g072900 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g2598 2 33209477 33211546 Mal2g2598 2 33209477 33211546 ECH