Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2462 ATGGCGAAGGAAAAAATTGCAAATGAAGCTATCAAGCATGCTTTGAGGGCTTTGCGGAAGCGGCATTTGAACGAAGAAGGGGCTCATGCTGCTGCTTTTGCTGCTCTTTCTAGACCTATTGTTTCCCAGGGCTCTGAATGGAAAGAGAGAGCAGAGGGTCTCGAAATGGAACTTCAGCAATGCTACAAAGCTCAATCCCGAGTATCTGAGCAACTTGTTGTCGAAATAGCTGAATCTAGAACTTTGAAAGCTGTGGTTCAAGAGAAAGAAACTGCAGTTGCTGATTTGCAGAAAGAGTTGACTGAAATGAGGGATGAGTGCATGCAATTGAAAAAGGACTTAGAAGACAAAATTAAAGGTCTTGAAATCATTCTAAGTGAGAATACAGAACTTAAAACACAATTGGAGCAAATGACTATTAGAGCCAAGAGTGCTGAAATTGAACATAAGACATTGGTGGATCGCATGATGTTAGAAAAAATGAAGAATGCTGAACAACTAAATGAGGCAAACCAACTGTATGATGACATGATCAAGCAGCTAAAGGCCAGTGGTTTAGAAAAACTTGCAAGGCAGCAGATAGATGGCATAGTTCGCCAAAGTGAAGAAGGTGCCGGTGTTTTTTTACATTCAAACGTCCCTTCCACGTGCAAACACAGGCTCCAAGCACACGAAGGTGGTTGTGCTGCCATATTGTTTGAGAACAATTCCAATAAATTGATAACTGGGGGACAGGATCGAACAGTTAAAGTGTGGGATACAGATTCAGGATCCTTAATTTCCAATCTTCGTGGCTGCCTCGGCTCTGTATTAGATCTCGCAATCACCAATGATAATAGATCTGTTATTGCTGCTAGCAGCTCAAACAACTTGTATGCTTGGGATCTCAACTCAGGTCGTGTCCATCATACGCTTACTGGCCACACAGATAAAGTCTGTGCTGTTGATGTCAGCAAGGTTTCCAGCCGTCATGTCGTCAGTTCAGCTTACGATCGTACTATAAAAGTTTGGGACTTGCATAAAGGTTATTGTATTAACACAATCATTTTCCACAGCAACTGCAATGCTCTTTGCTTCAGCACGGATGGACAGACCATATTCTCTGGACATATTGATGGAAATCTCCGATTATGGGATATTAAAACCGGAAAACTACTTAGCGAGGTTGTGGCACACTCACTTGCTGTCACGTCAATATCTCTTTCTCGAAATGGAAATGTTGTATTAACCAGTGGAAGGGACAATTCGCACAATTTGTTTGACGTGCGATCTCTAGAAGTTAGTGGCACACTGAAAGCCGCCGGAAATAGAGTGGCCTCCAATTGGAGTCGCTCGTGTATTAGTCCGGATGATAAAAATGTTGCTGCCGGATCATCAGATGGATCTGTCTATGTTTGGTCAGCATCTAAAGCTGATATAGTCGGTACTCTGAAGGAACATACTTCTTCTATCCTGTGTTGTACATGGAGTGGCCTTGGAAGACCCTTAGCTTCAGCTGACAAGAATGGAGTTGTTTGTATCTGGAACTAA 1530 0.4255 MAKEKIANEAIKHALRALRKRHLNEEGAHAAAFAALSRPIVSQGSEWKERAEGLEMELQQCYKAQSRVSEQLVVEIAESRTLKAVVQEKETAVADLQKELTEMRDECMQLKKDLEDKIKGLEIILSENTELKTQLEQMTIRAKSAEIEHKTLVDRMMLEKMKNAEQLNEANQLYDDMIKQLKASGLEKLARQQIDGIVRQSEEGAGVFLHSNVPSTCKHRLQAHEGGCAAILFENNSNKLITGGQDRTVKVWDTDSGSLISNLRGCLGSVLDLAITNDNRSVIAASSSNNLYAWDLNSGRVHHTLTGHTDKVCAVDVSKVSSRHVVSSAYDRTIKVWDLHKGYCINTIIFHSNCNALCFSTDGQTIFSGHIDGNLRLWDIKTGKLLSEVVAHSLAVTSISLSRNGNVVLTSGRDNSHNLFDVRSLEVSGTLKAAGNRVASNWSRSCISPDDKNVAAGSSDGSVYVWSASKADIVGTLKEHTSSILCCTWSGLGRPLASADKNGVVCIWN* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2462 509 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Mal2g2462 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 476 IPR001680 GO:0005515
Mal2g2462 509 SMART WD40_4 382 421 IPR001680 GO:0005515
Mal2g2462 509 SMART WD40_4 424 467 IPR001680 GO:0005515
Mal2g2462 509 SMART WD40_4 214 253 IPR001680 GO:0005515
Mal2g2462 509 SMART WD40_4 256 295 IPR001680 GO:0005515
Mal2g2462 509 SMART WD40_4 298 338 IPR001680 GO:0005515
Mal2g2462 509 SMART WD40_4 470 509 IPR001680 GO:0005515
Mal2g2462 509 SMART WD40_4 341 379 IPR001680 GO:0005515
Mal2g2462 509 ProSitePatterns Trp-Asp (WD) repeats signature. 240 254 IPR019775 -
Mal2g2462 509 Pfam WD domain, G-beta repeat 216 253 IPR001680 GO:0005515
Mal2g2462 509 Pfam WD domain, G-beta repeat 302 338 IPR001680 GO:0005515
Mal2g2462 509 Pfam WD domain, G-beta repeat 474 509 IPR001680 GO:0005515
Mal2g2462 509 Pfam WD domain, G-beta repeat 446 467 IPR001680 GO:0005515
Mal2g2462 509 Pfam WD domain, G-beta repeat 343 379 IPR001680 GO:0005515
Mal2g2462 509 Coils Coil 79 155 - -
Mal2g2462 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 339 - -
Mal2g2462 509 SUPERFAMILY WD40 repeat-like 213 509 IPR036322 GO:0005515
Mal2g2462 509 Gene3D - 442 509 IPR015943 GO:0005515
Mal2g2462 509 Gene3D - 350 441 IPR015943 GO:0005515
Mal2g2462 509 Coils Coil 164 184 - -
Mal2g2462 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 258 - -
Mal2g2462 509 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Mal2g2462 509 Pfam Autophagy protein 16 (ATG16) 53 168 IPR013923 -
Mal2g2462 509 Gene3D - 76 349 IPR015943 GO:0005515
Mal2g2462 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 477 509 - -
Mal2g2462 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 430 IPR001680 GO:0005515
Mal2g2462 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Mal2g2462 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 347 IPR001680 GO:0005515
Mal2g2462 509 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 4 509 - -
Mal2g2462 509 CDD WD40 217 509 - -
Mal2g2462 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Mal2g2462 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Mal2g2462 509 PANTHER AUTOPHAGY PROTEIN 16-LIKE 4 509 IPR045160 GO:0000045
Mal2g2462 509 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Mal2g2462 509 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Mal2g2462 509 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Mal2g2462 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 477 509 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2462 Mal-Chr2 31023713 31026494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2462 219 466 Miscellaneous Gene Families AT5G08390 27.344 1.24e-21 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2462 K17890 - gmx:100778336 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g2462 2 31023713 31026494 Mal2g2462 2 31023713 31026494 ECH