Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2055 ATGTGCTCAGTGTCATTCTACGCGAATTCTTCAACCCTAGTTGGTTCTTCTTCTTCTTGTTCATTCCTCTGTTCCTATGCCAAAACCACAACCCCCACCACCAACACAACCACCATTTCTGCTACTTCCATATCAGCCACACCCAAACATGTCTGGACCCGTACATCTCGTACTCCATTTTCCAACACCAACAAACAACAACAACAACAACAACGTCGTACCCGAACCCAACAACAACACCAACCAACTTACTTAGACCGCAGTGTCGACATGAAGGAACTACTAACCTCAATCGCAGAAACCCAAAACATCGAACAGCTCTACGCCATTATGTCCCCTTACAACGGTAGACAACTTTCAATCCATTTCATGGTTTCAATTCTCTCCCGCGAAACCGATTGGCAACGCTCTCTTGCAATTCTCGATTGGATGAACGAAATAGCTCAATATTCACCTTCTCTTTATGCTTACAATGTTGTTCTTCGCAATGTACTTCGCGCAAAGCAATGGCAACTTGCACATGGACTGTTCGATGAAATGCGTCAAAAGGGTCTTTCTCCTGATAAGTACACTTACTCAACGCTCATTACACATTTCAGTAAACAAGGTTTGTTTGATTCGGCTTTCTTTTGGCTGCAACAAATGGAACGTGATAATGTTTCTGGTGACCTTGTTTTGTATAGTAATTTGATTGAGCTTTCGCGGAAGCAGTGTGATTATTCAAAAGCCATTTCCATTTTCAATACGTTGAAAGGTTCGGGTAATATTGTACCTGATCTTATAGTTTATAATACTATGATTAGTGTGTTTGGTAAGGCTAAGCTTTTTCGCGAGGCTTGTCTTCTTCTTCAAGAGATGAGGGAGAACGGTGTTAACCCGAATACTGTTAGTTATTCTACGCTGCTTGCGATTTATGTTGATAATCAGAAGTTTGTTGAGGCGCTTTCTTTGTTTTCTGAAATGAATGAAGCTAAGTGTCCGATTGATCTCACTACGTGTAATATTATGATTGATGTTTATGGTCAGCTTCAAATGATCAAGGAAGCTGATTGCTTCTTTTGGGGTATGAGGAAAATGGGAATTGAACCCAATGTTGTTAGTTACAACACTATCTTGAGGGTTTATGGAGAGGCTGAGTTATTTGGTGAAGCTGTTCACCTTTTTAGTTTGATGCAAAGGAAAGGTGTACCGCAGAATGTTGTCACCTACAACACAATGATTAGTATTTATGGGAAATCTCTTGAGCACGAAAAGGCAACAAATCTCATTCAAGAAATGCAGAGTAGAGGTATTCAGCCAAATGCCATCACTTATTCAACCATAATATCTATATGGGAAAAGGCAGGGAAATTGGATAGGGCTGACGTGCTGTTTCACAAGTTAAGGACTTCCGGAGTTAAAATTGATGAGGTTCTTTATCAGACAATGATTGTGGCCTATCAGAAGGCTGGTTTAGTTGGTCATGCTAAAAGACTATTTAATGAGCTCAAGCAACCGGACAACGTTTCCAGGGAGACGGCAATCACGATACTTGCCAGAGCCGGTAAAGTTGACGAGGCTATGTGGGTTTTCCGACAGGCTTTTGATGCTGGAGAGGTGAAAGATATATCTGTATTTGGGTGCATCATTGATATTTTCTCAAGGGACAGAAAGTATGCACATGTGGTTGAAGTGTTTGAGAAGATGAGAGAGGTTGGACATTTTCCTGATTCTAATGTTATTGCTCTTGTGCTGAATGCTTTTGGAAAGCTGGGCGAGTTTGAGAAAGCAGATGCTTTATATAAACGGATGTATGAAGAAGGGTGTGTTTTCCCCGACGAAGTTCATTTTCAGATGCTCGGTTTATATGGCGCGAGAATGGATTTTACGATGGTGGAATCATTGTTTGAGAAGCTAGATTCACATCCCAATATCAACAAGAAGGAGTTGCATTTTGTTGTTGCCAACATTTATGAAAGAGCAGATAGATTTAACGATGCTTCCCGAATTATGAACAGGATGAATCACAAAGCAATAAGTAAGTCATGA 2028 0.4068 MCSVSFYANSSTLVGSSSSCSFLCSYAKTTTPTTNTTTISATSISATPKHVWTRTSRTPFSNTNKQQQQQQRRTRTQQQHQPTYLDRSVDMKELLTSIAETQNIEQLYAIMSPYNGRQLSIHFMVSILSRETDWQRSLAILDWMNEIAQYSPSLYAYNVVLRNVLRAKQWQLAHGLFDEMRQKGLSPDKYTYSTLITHFSKQGLFDSAFFWLQQMERDNVSGDLVLYSNLIELSRKQCDYSKAISIFNTLKGSGNIVPDLIVYNTMISVFGKAKLFREACLLLQEMRENGVNPNTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTILRVYGEAELFGEAVHLFSLMQRKGVPQNVVTYNTMISIYGKSLEHEKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRADVLFHKLRTSGVKIDEVLYQTMIVAYQKAGLVGHAKRLFNELKQPDNVSRETAITILARAGKVDEAMWVFRQAFDAGEVKDISVFGCIIDIFSRDRKYAHVVEVFEKMREVGHFPDSNVIALVLNAFGKLGEFEKADALYKRMYEEGCVFPDEVHFQMLGLYGARMDFTMVESLFEKLDSHPNINKKELHFVVANIYERADRFNDASRIMNRMNHKAISKS* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2055 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Mal2g2055 675 Pfam PPR repeat family 399 442 IPR002885 -
Mal2g2055 675 Pfam PPR repeat family 258 302 IPR002885 -
Mal2g2055 675 Pfam PPR repeat family 152 200 IPR002885 -
Mal2g2055 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Mal2g2055 675 SUPERFAMILY HCP-like 143 361 - -
Mal2g2055 675 Gene3D Tetratricopeptide repeat domain 501 675 IPR011990 GO:0005515
Mal2g2055 675 PANTHER OS03G0856100 PROTEIN 5 671 - -
Mal2g2055 675 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 5 671 - -
Mal2g2055 675 TIGRFAM PPR: pentatricopeptide repeat domain 332 365 IPR002885 -
Mal2g2055 675 TIGRFAM PPR: pentatricopeptide repeat domain 577 606 IPR002885 -
Mal2g2055 675 TIGRFAM PPR: pentatricopeptide repeat domain 155 188 IPR002885 -
Mal2g2055 675 TIGRFAM PPR: pentatricopeptide repeat domain 366 399 IPR002885 -
Mal2g2055 675 TIGRFAM PPR: pentatricopeptide repeat domain 261 295 IPR002885 -
Mal2g2055 675 TIGRFAM PPR: pentatricopeptide repeat domain 190 223 IPR002885 -
Mal2g2055 675 TIGRFAM PPR: pentatricopeptide repeat domain 436 470 IPR002885 -
Mal2g2055 675 TIGRFAM PPR: pentatricopeptide repeat domain 538 570 IPR002885 -
Mal2g2055 675 TIGRFAM PPR: pentatricopeptide repeat domain 296 329 IPR002885 -
Mal2g2055 675 TIGRFAM PPR: pentatricopeptide repeat domain 401 435 IPR002885 -
Mal2g2055 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Mal2g2055 675 Pfam PPR repeat 471 497 IPR002885 -
Mal2g2055 675 Pfam PPR repeat 538 566 IPR002885 -
Mal2g2055 675 Pfam PPR repeat 577 602 IPR002885 -
Mal2g2055 675 Pfam PPR repeat 508 526 IPR002885 -
Mal2g2055 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Mal2g2055 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Mal2g2055 675 Pfam Pentatricopeptide repeat domain 316 377 IPR002885 -
Mal2g2055 675 Gene3D Tetratricopeptide repeat domain 352 500 IPR011990 GO:0005515
Mal2g2055 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Mal2g2055 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Mal2g2055 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Mal2g2055 675 Gene3D Tetratricopeptide repeat domain 236 349 IPR011990 GO:0005515
Mal2g2055 675 Gene3D Tetratricopeptide repeat domain 106 235 IPR011990 GO:0005515
Mal2g2055 675 MobiDBLite consensus disorder prediction 48 83 - -
Mal2g2055 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Mal2g2055 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2055 87 613 Glycosyltransferase AT1G05670 23.327 2.80e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2055 - - mtr:MTR_3g083680 1151.73