Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2019 ATGAAGGGCTTATATGTTCTTTTAATGTTTGTTATTGCTTCACGTAGCTTGTGTTCTAGAATAACGCCTGATACAGGTTCTACCTTTGATGTTCTTACATATGGTGCCATTGGGGATGGCCAAACTGATGATTCAAATGCTTTTTTGAAAGCGTTTAACGACGCATGTGGTACAATTGAGGGAACCCCAACACTGACAATACCCGAAGGAAAAACATTCTTATTGCAACCTTTGTCATTTCAAGGTCCATGCAAATCCGCAACCATTACTGTTGAGCTTAACGGAAATATCACTGCCCCAAAAGACATTGATACTTGGAAATTCATAGGTTATAAAGAAAGGAAAATATGGATTCAGTTCTCAAAGATAAATGGTCTTGTTGTCAATGGGAAAGGAATTATTGATGGCCAAGGTTCTCCGTGGTGGGATAAGTATGGTAAAAATCAAGAAAAATATAGGCCAACAGCCCTTCGATTCCTTTCTTGTCAAGCTCTAGCACTTAGCGACTTGACTCACTTGAATAGTCCGAAGAATCATATAAGTATAGATTCATGCAAAGACGCTTCAATCTCCAATCTTCATATAAACGCACCACCAACTAGTCCAAACACTGATGGAATTGATATCTCAGAATCAACCAACATCGTCATTATGAATTCAACCATCCAAACTGGTGATGATTGCATCGCCATTAACAATGGCTCAAGCGTCATTAACATAACTGGTATTTTTTGTGGACCTGGCCATGGCATCAGTGTTGGTAGCCTCGGAAAAAATCAATCGTATGCTACAGTAGAAGACGTATATGTAACAAATTGCACATTCACTGGAACTTCAAATGGAGGTAGAATCAAGACATTTGAGGGAGGATCTGGATATGCGAGAAACATTACATATGAAGATATTATACTTAATGAAGTCAAGAATCCTGTGTTTATTGACCAAGATTATAACCCTAAAGCTGACAGTGCAGTGGATGTGAGTGATGTTACTTACAACAACATACGCGGAACCTCAGTTGGTAAATATGCAGTCCAACTTAATTGTGATCCCAACATTGGTTGTACCAACATTGTTTTGGAAAATATTAACATAACACGTGTCGATGGAGGGCAAGCAGATGTATTTTGCGTTGGTGGACATGGAACATCCTCTGCATGTAATCCAATTGTCCCGTGTCTTCAAAACAATAGTGCTATTTGGTACTAG 1209 0.3888 MKGLYVLLMFVIASRSLCSRITPDTGSTFDVLTYGAIGDGQTDDSNAFLKAFNDACGTIEGTPTLTIPEGKTFLLQPLSFQGPCKSATITVELNGNITAPKDIDTWKFIGYKERKIWIQFSKINGLVVNGKGIIDGQGSPWWDKYGKNQEKYRPTALRFLSCQALALSDLTHLNSPKNHISIDSCKDASISNLHINAPPTSPNTDGIDISESTNIVIMNSTIQTGDDCIAINNGSSVINITGIFCGPGHGISVGSLGKNQSYATVEDVYVTNCTFTGTSNGGRIKTFEGGSGYARNITYEDIILNEVKNPVFIDQDYNPKADSAVDVSDVTYNNIRGTSVGKYAVQLNCDPNIGCTNIVLENINITRVDGGQADVFCVGGHGTSSACNPIVPCLQNNSAIWY* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2019 402 Pfam Glycosyl hydrolases family 28 62 367 IPR000743 GO:0004650|GO:0005975
Mal2g2019 402 SMART pbh1 327 349 IPR006626 -
Mal2g2019 402 SMART pbh1 185 211 IPR006626 -
Mal2g2019 402 SMART pbh1 212 233 IPR006626 -
Mal2g2019 402 SMART pbh1 294 315 IPR006626 -
Mal2g2019 402 SMART pbh1 265 286 IPR006626 -
Mal2g2019 402 SMART pbh1 235 255 IPR006626 -
Mal2g2019 402 PANTHER - 18 394 - -
Mal2g2019 402 Gene3D - 15 398 IPR012334 -
Mal2g2019 402 ProSitePatterns Polygalacturonase active site. 242 255 IPR000743 GO:0004650|GO:0005975
Mal2g2019 402 SUPERFAMILY Pectin lyase-like 17 394 IPR011050 -
Mal2g2019 402 PANTHER - 18 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2019 Mal-Chr2 24812282 24814565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2019 26 398 Glycoside Hydrolase AT5G27530 49.077 5.52e-118 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2019 K01184 - zju:107414827 411.764