LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g1946	ATGGATGTGAGTAACAAGGGAGTTTCATTGATTACATTATCTCTGTTTCTATTGCTTTCAACTACTTTTCCGCACCATTTCTCCGCAGCCAATCAACTCGCCCATAATAAGAAATCAATCCCTCATATTTCTATTCATTCTCTCGTTTCCTCTATTGTTTACCCAATTAAGGGAAATGTATATCCACATGGGTATTATACTGTGTCGATCAACATTGGTAATCCCCCCAAGCTGTTTGAGCTTGACATTGACACAGGTAGTGATTTCAGTTGGGTTCAGTGCGATGCTCCATGTGAAAGTTGCACCGTGCCTAAAGATAAACTTTATAAACCCCGTGACAACCTTGTGAAATGTTCAGATCCAATGTGCCCCGCAGTCCCATCAACACCATATCATCGTTGCAAAAACCCAACTGCACCATGTGTCTATAAGGTTGATTATGCAGATGAAGGATCATCTCGCGGTCTATTGGTCCGAGACTACATGCACATAATAAGCACTGATGGATCTGCAATGGATCCTTTAGTGGCATTTGGGTGTGGAAATAATCAGATGTTTTCAGGTAATACTCCCCCACCTTCCACAATAGGGGTACTTGGCCTTGGAAATGGAAAGACAAGCATTTTGCATCAGCTTCATACTCTAGGATTTATTCGCAATGTATTGGGTCATTGTTTAAGTTCACAAGGAGGAGGTTATTTATTTTTTGGAGATAAGTTTATTCCCTCATCTGGAATTTTCTGGACGCCTATAGTTCATAGTTCATCAAAACAACACTATAACACAGGCCCAGCTGACTTGCTTTTCAATGGAAAGCCAACTCCTATCAAGGGTCTTCAACTTATCTTTGATAGTGGGACCTCCTACACTTACTTCAATTCTCCAATTTATGAAGTTATTGTTAAATTGGTGAATGATGATTTAAATGGAAAGCCGCTTACAAGAGCAACTGAGGATCCATCGTTACCTATTTGTTGGAAGGGTGTAAAGTCATTCAAATCTTTAAATGACGTCAAAGGCTATTTTAAGCTCCTAACTCTGAGCTTCACAACATTAAAGAATCCACAATTTCAATTGCCTCCTACATCTTATCTAATAATCACACAATATGGTAACGTCTGCTTGGGGATTCTTAATGGCACTCAAGCAGGCTTGGGAAATCGTAACGTAATTGGAGACATATCTTTTCAAGATAAGGTAATCATTTACGACAACGAAAAGCAACAAATTGGATGGGCCTATGCTAATTGTAATCAACTTCCTCCTTAG	1269	0.3948	MDVSNKGVSLITLSLFLLLSTTFPHHFSAANQLAHNKKSIPHISIHSLVSSIVYPIKGNVYPHGYYTVSINIGNPPKLFELDIDTGSDFSWVQCDAPCESCTVPKDKLYKPRDNLVKCSDPMCPAVPSTPYHRCKNPTAPCVYKVDYADEGSSRGLLVRDYMHIISTDGSAMDPLVAFGCGNNQMFSGNTPPPSTIGVLGLGNGKTSILHQLHTLGFIRNVLGHCLSSQGGGYLFFGDKFIPSSGIFWTPIVHSSSKQHYNTGPADLLFNGKPTPIKGLQLIFDSGTSYTYFNSPIYEVIVKLVNDDLNGKPLTRATEDPSLPICWKGVKSFKSLNDVKGYFKLLTLSFTTLKNPQFQLPPTSYLIITQYGNVCLGILNGTQAGLGNRNVIGDISFQDKVIIYDNEKQQIGWAYANCNQLPP*	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g1946	422	ProSitePatterns	Eukaryotic and viral aspartyl proteases active site.	281	292	IPR001969	GO:0004190\|GO:0006508
	Mal2g1946	422	PRINTS	Pepsin (A1) aspartic protease family signature	281	292	IPR001461	GO:0004190\|GO:0006508
	Mal2g1946	422	PRINTS	Pepsin (A1) aspartic protease family signature	389	404	IPR001461	GO:0004190\|GO:0006508
	Mal2g1946	422	PRINTS	Pepsin (A1) aspartic protease family signature	72	92	IPR001461	GO:0004190\|GO:0006508
	Mal2g1946	422	Gene3D	Acid Proteases	239	420	IPR021109	-
	Mal2g1946	422	Pfam	Xylanase inhibitor N-terminal	66	238	IPR032861	-
	Mal2g1946	422	Gene3D	Acid Proteases	43	238	IPR021109	-
	Mal2g1946	422	ProSiteProfiles	Peptidase family A1 domain profile.	66	413	IPR033121	-
	Mal2g1946	422	Pfam	Xylanase inhibitor C-terminal	280	412	IPR032799	-
	Mal2g1946	422	PANTHER	EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN	2	420	-	-
	Mal2g1946	422	ProSitePatterns	Eukaryotic and viral aspartyl proteases active site.	81	92	IPR001969	GO:0004190\|GO:0006508
	Mal2g1946	422	PANTHER	ASPARTYL PROTEASES	2	420	IPR001461	GO:0004190\|GO:0006508
	Mal2g1946	422	SUPERFAMILY	Acid proteases	58	419	IPR021109	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g1946	Mal-Chr2	23738024	23741165	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal2g1946	36	421	Miscellaneous Gene Families	AT1G44130	56.041	1.31e-156	446

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g1946	-		-	gmx:100803640	547.74