Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1829 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCTCGGACTCCACTAGGATTGAATACAAAGTTTTCAACTCACCATCCGGTACTGAAGAGACCGATAACGGTAGCATTTAAAGGAGATAAACAGAATGACACGGCTTTGGTCGCGACTCAAGAGAAAGTTCCTACACAAGTTAAAACAACCAAGACGCACAAGAAAAGGATAGCGAAAACCGATAAACTACCTAAGAAAGCAAGAGCTGTTTTAAAAGAAGAAACTTGTCCGTCTTCATTGGATGTGGACTATAACGAAGCTGCTGCCATACTTGAAAATATATACAAACTTAGCCCGACATCTGATGTATGTGATGCAGATTATATAGCTAGTAAGATCAAAAGAGTCTCTCGACGGGGTAAGAAGATTGGTGATGTAAGTAAAGAGGAGTTAAACAATGATAGGGTGGTCAGAAACCAGAAAACGAAAGCCAAACGAATGAATCTTGATGAGAGAATTGCGTTAAAAACGAACGACGGTAGTGAAGATGCCATTCCGACTCGGAAAAAAAGAAATGCCAGGAATAGAATTACGAAGGTTGAGGAACTTCTTAGGGAATATTCAGCACCAGCTGATTTTGTCAGTCTGGACTGGAAAAAAATGAAAATACCTCCCGTTCTTCCTTCTTCAGAGCATGCATTTTTGTTCAAGTTGATGCAACCAATGCAGGCACTCCTTCAAGTGAAAGACGATTTGCAGAAGGAACTAGCAAGAGAACCTACAGATGATGAAATAACTGACGCAACAAACATGCGCACTTCTCTAGTAAAGAGGGCAATAGAGGTTGGAAGAGCTGCAAGAAACAAGCTAATAAAGCACAATCTCCGGCTTGTCTTGTTCGTGATCAACAGATACTTTTCAGATTTCGCTAATAGCCCAAGGTTTCAAGATCTTTGTCAGGCTGGAGTTAAGGGACTGATAACAGCTATTGATCGTTTTGAGCCAAACCGGAGATTTCGGCTTTCAACTTACGGTTTGTTTTGGATAAGACATGCTATCATTCGTTCCATGACCCTCTCAAGCTTCTCACGTGTTCCCTTTGGACTTGAGTCAGTTAGAGCAGAGATTCGAAGAGCTAAGATTGAGTTAACATTTGAGCTTCATAAGCCACCAACAGAGGATGAAATCATAGAAAGAGTTCATATATCGCCTGAAAGATACCGTGACGTGATGAAGGCGTCAAAACCCTTTCTTTCGCTTCATTCGAGACATCTAACCACCCAAGAAGAGTTTATCAATGGCATCGTTGATGATGGCGGTGTTGATGGGGATAACAGGAGGCAACCTGCTCTATTAAGGCTTGCTCTTGATGATGTGCTTGATTCCCTAAAGCCTAAGGAGAACTTGGTGATCAGACAGAGATTTGGACTTGATGGTAAGGGTGACAGAACTTTGGGAGAGATCGCGTCAAACTTGAACATCTCTAGGGAAATGGTTAGAAAGCACGAAGTCAAGGCTCTCATGAAGCTCAAGCATTCGGCTCGATTGGATTACCTTCGTCGCTATGTTGTATAA 1545 0.4214 MGVVTVSSSAARTPLGLNTKFSTHHPVLKRPITVAFKGDKQNDTALVATQEKVPTQVKTTKTHKKRIAKTDKLPKKARAVLKEETCPSSLDVDYNEAAAILENIYKLSPTSDVCDADYIASKIKRVSRRGKKIGDVSKEELNNDRVVRNQKTKAKRMNLDERIALKTNDGSEDAIPTRKKRNARNRITKVEELLREYSAPADFVSLDWKKMKIPPVLPSSEHAFLFKLMQPMQALLQVKDDLQKELAREPTDDEITDATNMRTSLVKRAIEVGRAARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYGLFWIRHAIIRSMTLSSFSRVPFGLESVRAEIRRAKIELTFELHKPPTEDEIIERVHISPERYRDVMKASKPFLSLHSRHLTTQEEFINGIVDDGGVDGDNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1829 514 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 276 502 IPR014284 GO:0003700|GO:0006352|GO:0006355
Mal2g1829 514 Pfam Sigma-70 region 2 280 346 IPR007627 GO:0003700|GO:0006352|GO:0006355
Mal2g1829 514 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 514 - -
Mal2g1829 514 PRINTS Major sigma-70 factor signature 489 500 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal2g1829 514 PRINTS Major sigma-70 factor signature 331 339 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal2g1829 514 PRINTS Major sigma-70 factor signature 474 489 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal2g1829 514 PRINTS Major sigma-70 factor signature 453 465 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal2g1829 514 PRINTS Major sigma-70 factor signature 307 320 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal2g1829 514 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 200 347 IPR013325 GO:0003700|GO:0006352|GO:0006355
Mal2g1829 514 Gene3D - 354 405 IPR036388 -
Mal2g1829 514 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 419 507 IPR013324 -
Mal2g1829 514 Pfam Sigma-70 region 3 364 431 IPR007624 GO:0003700|GO:0006352|GO:0006355
Mal2g1829 514 Gene3D - 437 514 IPR036388 -
Mal2g1829 514 Gene3D RNA Polymerase Primary Sigma Factor 219 351 - -
Mal2g1829 514 Pfam Sigma-70, region 4 449 502 IPR007630 GO:0003700|GO:0006352|GO:0006355
Mal2g1829 514 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 514 - -
Mal2g1829 514 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 355 420 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1829 Mal-Chr2 22044374 22048555 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1829 K03093 - gmx:100776369 754.207