Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1155 ATGTCAAATAATCGATTCAATCCCAACACCGATCCTGTCGATAACGGCGAAGAGCCATTATCACCTCGATCACAGTATTTTCGTTACATAGCATCGTTAACCCAAAACCAAAACCAAAACCAGAACCAGAACTCGTTCTTGCCTCAAATCCAAAACCCTAATCAAACCCTAGAACAAGCTTTTTCTTGTCTTTCTGTTACTAATCCTAATCCCTATCAATCTTTTGGTTACGGTGTTGATGCTAATCATATTCATGATTACTCTGGTGTTGGTGTTAGTGTTAATCCTTACTATAACCATGGGTTTCATGTCTCTAATCTTAATCAAACTAGAGGAGTTAATGGTTTTGATAGACCTGTTAGGAATAACATAGGTTATGGTAGAGGTAGAGGAATTTCGCAGCCGCGGCGGAGTTCTGGTGTAAATCATATTAGGTATAATCATTTGAATGGGGGTGCTGCTGCTGGTGGTTATGGTAGTAATGATGTTTTTGATGGTAGTGAAGAATTTGTGAGAAATATTCGATGTGCTTTAGGAAATGAATCCTCTGTGCCAACTTGGGTTAATGATGTTGCTAATGTTAATAATAATGTGAATGGAATGAATGGGCATTGGTTTGATGAATTTCGAGGGAGGGTTTATTCGATGTCTAAAGATCAACATGGGAGTAAGATTTTGCAAGAGGTGATGGAGAATTTGGGACCTGAAGGGGTTTCATACTTTTTCTTGGAGCTGATTAATCACATGTGTGAGTTGATGGTTGATCCTATTGGTTATGAGGTTATTCAGAAAATGGTGGAAGTTTGTAACCAAGATCAACAGACTCAGACTGTTCTGTTGGTCACACACCATGGTGCTCAGTTTATCAGAATCTGCCTTAGCATTCATGGATCTCGTTCTGTTGAGAAACTGTTGGAGAAAGTTACCACCAGAGAGCAAAGAGGTCTAATTTTGTCAGCTCTGACCCCTGGTGCTATTGTATTGTCTAAGGATATAAATGGTCATCGTGTGGTTTTCAACTGTTTGAAATATTTCCCTCATGCTGATACTGAGCAATTCCTGGAAGTTATTGCAAGACATTCTTTGACACTTGCAAGAGATAAGACCGGATGCTGTGTGCTGCAGTATTGCGTTAGCCATGCTCAAGGAGCAACCAAGAGTCTTCTACTTAATCAAATCGTACTTCATGCTCCACTATTAGCAGAAGATTGTTACGGCAACTATGTGATTCAACATCTAATATCTCTGAAAATACCTACAGTCTCAAACAGCCTATTCAGTCAGCTTGAAGGGCAATTTGTATCTCTTTCCTGCAATAAATATGGCAGTAATGTAGTGGAGAAGTTTTTGCATGATTCAGGAGTGCAGGTATCTGCCTTCATCATTTTAGAGTTGCTTGCTGATCCAAATGTATCAAGGCTCCTTGTGGATCCTTATGGAAATTTTGTCATCAGTACGGCATTGACTAAATTTAAGGGTTCTCCATACATTAAGAATGCCTTGCTGGACCTGATCCGAGTAAACGCTCAAATGATGCGTAGCAATATGTTTGGCAAAAAGGTGCTTGATAAGGTTGAGGGTAAAAATCGGCATAATAATATATAA 1605 0.3931 MSNNRFNPNTDPVDNGEEPLSPRSQYFRYIASLTQNQNQNQNQNSFLPQIQNPNQTLEQAFSCLSVTNPNPYQSFGYGVDANHIHDYSGVGVSVNPYYNHGFHVSNLNQTRGVNGFDRPVRNNIGYGRGRGISQPRRSSGVNHIRYNHLNGGAAAGGYGSNDVFDGSEEFVRNIRCALGNESSVPTWVNDVANVNNNVNGMNGHWFDEFRGRVYSMSKDQHGSKILQEVMENLGPEGVSYFFLELINHMCELMVDPIGYEVIQKMVEVCNQDQQTQTVLLVTHHGAQFIRICLSIHGSRSVEKLLEKVTTREQRGLILSALTPGAIVLSKDINGHRVVFNCLKYFPHADTEQFLEVIARHSLTLARDKTGCCVLQYCVSHAQGATKSLLLNQIVLHAPLLAEDCYGNYVIQHLISLKIPTVSNSLFSQLEGQFVSLSCNKYGSNVVEKFLHDSGVQVSAFIILELLADPNVSRLLVDPYGNFVISTALTKFKGSPYIKNALLDLIRVNAQMMRSNMFGKKVLDKVEGKNRHNNI* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1155 534 ProSiteProfiles Pumilio RNA-binding repeat profile. 392 427 IPR001313 GO:0003723
Mal2g1155 534 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 187 529 IPR033133 GO:0003723
Mal2g1155 534 PANTHER PUMILIO HOMOLOG 15 39 524 - -
Mal2g1155 534 ProSiteProfiles Pumilio RNA-binding repeat profile. 428 464 IPR001313 GO:0003723
Mal2g1155 534 Gene3D - 195 533 IPR011989 -
Mal2g1155 534 SMART pum_5 208 243 IPR001313 GO:0003723
Mal2g1155 534 SMART pum_5 392 427 IPR001313 GO:0003723
Mal2g1155 534 SMART pum_5 244 279 IPR001313 GO:0003723
Mal2g1155 534 SMART pum_5 428 464 IPR001313 GO:0003723
Mal2g1155 534 SMART pum_5 283 319 IPR001313 GO:0003723
Mal2g1155 534 SMART pum_5 466 503 IPR001313 GO:0003723
Mal2g1155 534 SMART pum_5 356 391 IPR001313 GO:0003723
Mal2g1155 534 SMART pum_5 320 355 IPR001313 GO:0003723
Mal2g1155 534 Pfam Pumilio-family RNA binding repeat 432 466 IPR001313 GO:0003723
Mal2g1155 534 Pfam Pumilio-family RNA binding repeat 400 414 IPR001313 GO:0003723
Mal2g1155 534 Pfam Pumilio-family RNA binding repeat 287 321 IPR001313 GO:0003723
Mal2g1155 534 Pfam Pumilio-family RNA binding repeat 328 357 IPR001313 GO:0003723
Mal2g1155 534 Pfam Pumilio-family RNA binding repeat 212 239 IPR001313 GO:0003723
Mal2g1155 534 Pfam Pumilio-family RNA binding repeat 362 393 IPR001313 GO:0003723
Mal2g1155 534 Pfam Pumilio-family RNA binding repeat 248 276 IPR001313 GO:0003723
Mal2g1155 534 MobiDBLite consensus disorder prediction 1 21 - -
Mal2g1155 534 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 39 524 - -
Mal2g1155 534 ProSiteProfiles Pumilio RNA-binding repeat profile. 208 243 IPR001313 GO:0003723
Mal2g1155 534 ProSiteProfiles Pumilio RNA-binding repeat profile. 244 280 IPR001313 GO:0003723
Mal2g1155 534 ProSiteProfiles Pumilio RNA-binding repeat profile. 355 391 IPR001313 GO:0003723
Mal2g1155 534 SUPERFAMILY ARM repeat 203 526 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1155 Mal-Chr2 13531615 13534541 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1155 - - mtr:MTR_3g102650 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1155 2 13531615 13534541 Mal2g1155 2 13531615 13534541 ECH