LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g0950	ATGGGTCACGTAGGTTCAAGCAAAGACGCGAACAGAGCGAGTCTAGATATGAACGATTTCGACGAAGACTACACCAACACGGAAATGGACATTGACCTAGACGACGAAGATCCATCCAACGCCGAAATCCTCAACGAACTCGGCGATGATATGGTCAAATACTTTTGCAAAAAAGCTTCCGTTATGTTCTTCGATGAATACGGTCTCATAAGTCACCAAATCAATTCGTATAATCAATTAATCACTTCTGGTCTTCAAAGCGCTTTTGATTCCTTCGGAGATCTCGCTGTTACGCCGGGTTTTGATCCTTCTAAGAAAGGAGTTGATGATCATTACCGTTATGCTACGGTTAAGTTTGGGAATGTAACCCTTGATCGACCTAAGTTTTGGTGTGGTGAAGGGAATGCTCAGGAGCTGAAGATGCTTCCGAGACATGCTAGGTTACAGAGAATGACTTATGCTTCCAAAATGAAAGTCCAGGTTCAACTTCAGGTGTATATTCCAAAGAAGGTCCGGAGTGATAAGTTTAAGACTGGAAAAGAAGAGTATATTGATAGAGAGATTATCAGGGATGAGGAGGGAGAAATAACTATTGGGAGACTGCCTGTTATGGTTAAGTCTGATCTTTGCTGGATGAGTGAAGCCGAAAAAGGTGATTGTGAATTTGACCATGGAGGCTACTTTCTGATTAAGGGTGCTGAGAAAATTTTTATTGCACAAGAGCAGATATTTCTGAAGAGGCTCTGGGTTTCAAATATTCCATACTGGGCAGTAGCATTCAAGTCACAGATGAAGAGAAATAGGATGGTTGTTAAATTGGTCGAAGGTTCCACAATTGAAGGAATTACAAACGGAGAGAAGCTGCTCACAGTGTATTTTCTATCTGTCGAGATTCCTGTATGGATACTGTTTTTTGCTCTTGGTGTGACTTCAGATAAAGAGATTGTTGATCTCATCGATTATGGAGAGGCAGATGGAAGAATTGAAAACATTCTCTTTGCATCCATCCGTGAGGCGGACGAAAAATGTGAAACTTTTCGAAGGGGGAAGAATGCTCTTCTTTACTTAGAGGAACGTGTCAAAGGTGTGCAGTTTCCACCCGCAGAATCTATTGACGAGTGCCTTGACATGTATGTCTTTCCGAACATTAAAGGATTAAAAAGAAAGGCACGGTACCTGGCATACATGGTGAAGGTTCTCTTACTGGCGTATACTGGCTGCCGAAAAACTGATAACAGGGATGATTTTCGAAACAAGAGGCTTGAGTTGGCTGGTGAGCTGCTCGAGCGCGAGATTAAAGTGCACTTTGCCCATGCTCGGAAGAGAATGGGGAAGGCTCTGCAGAGAGACCTCTATGGAGATAGAGATGTTCGTCAAATTGAGCACTATCTTGATGCTTCCATTATTACAAATGGTCTCCAAAGAGCGTTCTCTACTGGAGCATGGACACATCCTTTTAAAAGGATGGAAAGGATTTCTGGTGTGGTTGCAACTCTTGGCCGAACCAATCCATTGCAAACCATGGCTGAATTAAGAAGAACAAGGCAACAAGTTCAGTATACAGGAAAGGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGAAAGGTTTGTTTCCTCTCTACCCCAGATGGTGAAAATTGTGGACTGGTAAAAAATTTAGCTGTCACAGGAGTAGTTAGTACCAATGTAACTGAATCTATACTTCCTCAGCTGTATGAAAGTGGGATGGAAGAACTTGTTGATGATACTACAACTGTTATTGGAAAAAAAGACAAAGTCTTTCTAAATGGGGACTGGGTTGGAGTTTGTTCAAATTCCACATCATTTGTGACAGAGCTACGGAACAGAAGACGAAGAAATGAATTGCCTCATCAGGTGGAAATCAAAAGAGATCAACTTCAACAAGAAGTGCGCATATTATCTGATGCAGGAAGGATTCTCCGTCCACTCTTGGTTGTTAGTAATCTGCTCAAGATTAAAGGATCTAAGTCGGAGCATAAATCTTTCAAGTCCCTATTGGATAATGGCGTGATTGAGCTAATTGGTCCTGAAGAAGAAGAGGACTTCAAGACTGCTTGGGGTGTTCAATATTTGTTTGGCAAAGAGGGAAAGTCTTATGTAAAGTACACACATTGCGAACTTGATATGTCGTTCTTATTGGGTCTAAGCTGTTCACTTGTTCCATATGCTAACCACGACCATGCTAGGAGAGTGTTGTACCAATCCCAGAAGCATTCTTCACAAGCTATTGGTTTTGCTACGACAAACCCAAATATTAGAGTCGATGCTTTGTCTCATCAATTATTTTATCCTCAAAGACCACTGTTTCAGACAATGACATCTGATTGTCTTGGAAAACCTGGATATCTAGGTCAAAGTAAAGTTGTTCCGAAGTCTGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTACATCTCGGATACAATCAAGAAGATTCCTTGGTGATGAACCGTGCTTCTTTGCAGCGTGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAAGCTGAAATTGAAAATAAGGAATCTTCAGAAAAGAGAAAGAAGCCCGAAGACATTGTTAATTTTGGAAAGATACAGAGTAAAATTGGTCGAGTTGACAGCCTTGACGATGATGGCTTTCCATTTGTTGGGGCCAATCTCCAAAGTGGTGATATTATTATTGGGCGGTGTGCTGATTCAGGGACAGACCATAGTATAAAGTTAAAACACACAGAAAGGGGTTATGTTCAAAAGGTTGTGCTGTCCTCAAATGACGAGGGGAAGAATTTTGCTGTTGTTTCGTTGAGACAGGTTAGAAGCCCAGTTCTTGGAGATAAGTTCTCCAGTATGCATGGACAGAAGGGTGTTTTAGGATTTCTGGAATCTCAGGAAAATTTTCCCTTCACAAAACAAGGCATTGTTCCTGATATTGTCATAAATCCACATGCATTTCCCTCGCGACAAACTCCTGGGCAGCTCCTAGAGGCTGCTTTAGGAAAGGGTATCGCTTGTGTTGGTTCACTGAGAAATGCTACTCCTTTTTCCACTTCCTCTGTTGAAGCGATAACTGATCAGCTTCACAGAGCTGGTTTTTCAAGATGGGGAAACGAACGAGTATACAACGGGAGGACTGGTGAGATGGTCCGAGCACTCATATTTATGGGCCCGACATTCTACCAGCGACTGCACCACATGTCCGAAGACAAAGTCAAATTCAGGAACACCGGCCCAGTTCACCCGCTGACCCGACAGCCTGTCGCTGACAGGAAGCGATTTGGAGGCATCAAGTTTGGTGAGATGGAGCGTGATTGCCTGATAGCTCATGGTGCATCAGCCAACTTGTATGAGCGTCTCTTCACCCTAAGCGATTCATCTCAGATACACATTTGTAGTAAATGCAAAAATGTCGCCAATGTGATCTTGAGACCGGTATCTGGTGGCCGGAAAATCCGAGGTCCCTATTGCCGATTCTGTGAATCAGCCGATGACATTGTGGTGGCCAGTGTTCCATATGGAGCAAAGTTATTGTCTCAGGAGCTGTTCAGCATGGGCATTAATCTCAAATTTGAAACAGAGCTTTGCTAG	3600	0.4281	MGHVGSSKDANRASLDMNDFDEDYTNTEMDIDLDDEDPSNAEILNELGDDMVKYFCKKASVMFFDEYGLISHQINSYNQLITSGLQSAFDSFGDLAVTPGFDPSKKGVDDHYRYATVKFGNVTLDRPKFWCGEGNAQELKMLPRHARLQRMTYASKMKVQVQLQVYIPKKVRSDKFKTGKEEYIDREIIRDEEGEITIGRLPVMVKSDLCWMSEAEKGDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVSNIPYWAVAFKSQMKRNRMVVKLVEGSTIEGITNGEKLLTVYFLSVEIPVWILFFALGVTSDKEIVDLIDYGEADGRIENILFASIREADEKCETFRRGKNALLYLEERVKGVQFPPAESIDECLDMYVFPNIKGLKRKARYLAYMVKVLLLAYTGCRKTDNRDDFRNKRLELAGELLEREIKVHFAHARKRMGKALQRDLYGDRDVRQIEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGVVSTNVTESILPQLYESGMEELVDDTTTVIGKKDKVFLNGDWVGVCSNSTSFVTELRNRRRRNELPHQVEIKRDQLQQEVRILSDAGRILRPLLVVSNLLKIKGSKSEHKSFKSLLDNGVIELIGPEEEEDFKTAWGVQYLFGKEGKSYVKYTHCELDMSFLLGLSCSLVPYANHDHARRVLYQSQKHSSQAIGFATTNPNIRVDALSHQLFYPQRPLFQTMTSDCLGKPGYLGQSKVVPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSEKRKKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRALIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAKLLSQELFSMGINLKFETELC*	1200

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g0950	1199	Gene3D	RNA polymerase alpha subunit dimerisation domain	1083	1197	-	-
	Mal2g0950	1199	SUPERFAMILY	beta and beta-prime subunits of DNA dependent RNA-polymerase	51	1197	-	-
	Mal2g0950	1199	Gene3D	-	62	243	-	-
	Mal2g0950	1199	Gene3D	-	410	636	-	-
	Mal2g0950	1199	PANTHER	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	38	1196	IPR015712	GO:0003899\|GO:0006351\|GO:0032549
	Mal2g0950	1199	PANTHER	DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED	38	1196	-	-
	Mal2g0950	1199	Gene3D	-	727	1082	IPR037033	GO:0003677\|GO:0003899\|GO:0006351
	Mal2g0950	1199	Pfam	RNA polymerase Rpb2, domain 4	595	655	IPR007646	GO:0003677\|GO:0003899\|GO:0006351
	Mal2g0950	1199	Pfam	RNA polymerase Rpb2, domain 7	1098	1196	IPR007641	GO:0003677\|GO:0003899\|GO:0006351
	Mal2g0950	1199	CDD	RNA_pol_B_RPB2	69	1195	IPR015712	GO:0003899\|GO:0006351\|GO:0032549
	Mal2g0950	1199	Pfam	RNA polymerase beta subunit	68	458	IPR007644	GO:0003677\|GO:0003899\|GO:0006351
	Mal2g0950	1199	ProSitePatterns	RNA polymerases beta chain signature.	949	961	IPR007121	GO:0003677\|GO:0003899\|GO:0006351
	Mal2g0950	1199	Gene3D	-	757	945	IPR014724	GO:0003899
	Mal2g0950	1199	Gene3D	RNA polymerase Rpb2, domain 2	254	409	IPR037034	GO:0003677\|GO:0003899\|GO:0006351
	Mal2g0950	1199	Pfam	RNA polymerase Rpb2, domain 5	671	717	IPR007647	GO:0006351
	Mal2g0950	1199	Pfam	RNA polymerase Rpb2, domain 6	726	1096	IPR007120	GO:0003677\|GO:0003899\|GO:0006351
	Mal2g0950	1199	Pfam	RNA polymerase Rpb2, domain 2	284	422	IPR007642	GO:0003677\|GO:0003899\|GO:0006351
	Mal2g0950	1199	Pfam	RNA polymerase Rpb2, domain 3	499	558	IPR007645	GO:0003677\|GO:0003899\|GO:0006351

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g0950	Mal-Chr2	11073939	11080679	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g0950	-		K16252	gmx:100815934	1991.08

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal2g0950	2	11073939	11080679	Mal2g0950	2	11073939	11080679	ECH