Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0850 ATGAGTACTGTTTGTATTAGATACCCATTTGGAATCCCTTTCCATTCCCAATCCCTAACTCGCAGATTGGATTGCTCAATCTCCCAATTTCACCTTCACGTCGACCTTTCCAGAATCACCTTCTATTCTGCTTCTAAGGGATTAATTCATCGACTTTGTGCACGGCCTGATATCGATGATTTCTACTGGGAGAAAGTTCCAACACCCATTCTTGACACAGTTGAAACCCCTCTTTGCTTGAAGAACTTATCACTTAGGGAGTTGAAACAACTAGCTGCTGAAATCCGTTTAGATTTGTCTTCTATTTTGTCAGGCACACAAATATCACTAAATCCTAGTATGGCTGCGGTGGACCTGACAGTTGCTATACATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTCGGTGATCAAACATATGCGCATAAGATACTTACAGGAAGGAGATCACTCATGAAGACAATCAGAAAAAAGAACGGACTTTCTGGTTTTACTTCTCGATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCACGGATGCAACAGTATATCTGCTGGACTTGGCATGGCAGTTGCACGGGATATTAAAGGGAGACGAGAACGTGTAGTTGCAGTTATCAGCAATTGGACAACTATGTCTGGTCAGGTGTACGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTGGTGATTTTGAACGATAGCCGTCACTCTTTACTCCCAAAAATTGAGGACGGCACAAAAACCTCTGTCAATGCCCTATCTAGTACCCTTAGCAGGCTCCAGTCCAGTAAATCTTTCCGAAGGTTTAGAGAAGCTGCTAAGGGTGTTACAAAACGTATTGGCAGGGGCATGCATGAATTGGCAGCTAAAGTTGATGAATATGCCCGTGGTATGATGGGTCCACCAGGTTCTACTCTATTTGAAGAGCTTGGGTTGTATTACATAGGGCCAGTGGATGGACACAATATTGAAGATCTAATAAGTGTTCTTCAAGAAGTAGCTTCCTTGGATTCGATGGGTCCTGTCTTGGTTCATGTTATAACTGATGAAAACCAGGGAGAAGAACACAGTAAAAAATGTTATATAACAGACAAGCAGCAGGATGAATCTGTTAGTCCTGATTTGTTAGACAATGCTGGTCGGCCTCGAACATATGGTGATTGCTTTGTGGAATCTTTGGTTGCCGAAGCTGAGAGAGACAAAGATATTGTGGTTGTTCATGCAGGATTCACGACGGAGCCATCACTTGAACTGTTTCGGGAAAAATTTCCAGATAGAATTTTTAATGTGGGAATTGCTGAGCAACATGCAGTCACATTTGCTTCTGGTTTATCATGTGGTGGATTAAAGCCATTTTGCATTATACCTTCTTCCTTTCTACAGAGAGCCTATGACCAGGTGGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGCTTTGTCATCACAAGTGCAGGATTGGTAGGTTCGGATGGTCCCCTTCAGTGTGGAGCATTTGATATAACGTTCATGTCATGCTTACCAAATATGATTGTCATGGCACCATCTGACGAGGTTGAACTTGTGCACATGGTGGCTACTGCTACTCATATCAATGATCGGCCAGTTTGCTTTCGGTATCCTAGGGGTGCCTTGGTTGGGGAAGACCATGCTATACCTGATGGAATCCCAATTGAGATTGGAAAGGGAAGAATACTTGTTGAAGGCAAAGATGTTGCCTTACTGGGATATGGATCAATGGTTCAGAACTGTCTAAAGGCTCATTCACTTCTTACAAATCTTGGCGTTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGGCAGCTTTGTAAACACCATTCTTTTCTAATTACTGTTGAGGAAGGGTCTATTGGAGGATTTGGTTCCCATGTTGCTCAATTTATTGCTCTTGATGGACTTCTTGACCAAAGAATTAAGTGGCGACCAATTGTCTTACCAGACAATTATATTGAACATGCATCACCAAACCAACAGCTTGACCAAGCGGGGTTGACTGGACATCACATTGCTGCAACAGCATTGAGTTTACTGGGCCGTACCCGTGAAGCTCTATCATTTATGTGTTCGTGA 2136 0.4288 MSTVCIRYPFGIPFHSQSLTRRLDCSISQFHLHVDLSRITFYSASKGLIHRLCARPDIDDFYWEKVPTPILDTVETPLCLKNLSLRELKQLAAEIRLDLSSILSGTQISLNPSMAAVDLTVAIHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTIRKKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTMSGQVYEAMSNAGYLDSNMVVILNDSRHSLLPKIEDGTKTSVNALSSTLSRLQSSKSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMMGPPGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLDSMGPVLVHVITDENQGEEHSKKCYITDKQQDESVSPDLLDNAGRPRTYGDCFVESLVAEAERDKDIVVVHAGFTTEPSLELFREKFPDRIFNVGIAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELVHMVATATHINDRPVCFRYPRGALVGEDHAIPDGIPIEIGKGRILVEGKDVALLGYGSMVQNCLKAHSLLTNLGVEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDQRIKWRPIVLPDNYIEHASPNQQLDQAGLTGHHIAATALSLLGRTREALSFMCS* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0850 711 SMART Transket_pyr_3 390 555 IPR005475 -
Mal2g0850 711 Pfam Transketolase, pyrimidine binding domain 391 552 IPR005475 -
Mal2g0850 711 Gene3D - 390 558 - -
Mal2g0850 711 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 71 355 IPR005477 GO:0008661|GO:0016114
Mal2g0850 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 710 IPR005477 GO:0008661|GO:0016114
Mal2g0850 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 68 451 IPR029061 -
Mal2g0850 711 CDD TPP_PYR_DXS_TK_like 396 549 - -
Mal2g0850 711 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 70 700 IPR005477 GO:0008661|GO:0016114
Mal2g0850 711 Pfam Transketolase, C-terminal domain 568 691 IPR033248 -
Mal2g0850 711 SUPERFAMILY TK C-terminal domain-like 563 699 IPR009014 GO:0003824
Mal2g0850 711 Gene3D - 63 362 - -
Mal2g0850 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 1 710 - -
Mal2g0850 711 CDD TPP_DXS 110 360 IPR005477 GO:0008661|GO:0016114
Mal2g0850 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 388 578 IPR029061 -
Mal2g0850 711 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 74 697 IPR005477 GO:0008661|GO:0016114
Mal2g0850 711 Gene3D - 568 699 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0850 Mal-Chr2 9880123 9885512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0850 428 650 Acyl Lipid Metabolism Gene Families AT3G13450 25.105 2.27e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0850 K01662 - gmx:100793268 1183.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0850 2 9880123 9885512 Mal2g0850 2 9880123 9885512 ECH