Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0646 ATGGGTGTTGTTTCTCATTACGCAGTTCCGTCATGCTTCGTCCCATCACTGTCGTGTGCGGCTTCAACTCTCCTTCGTTCTCGCCTCAGACCCACCATCCGATGCTGCACCACTCTCTCTGCAACCTCTCCAGAGACTCCCACTCCGTCCCCAACCACTATAAAGAAACGAGTTGTCTCTGGTGTTCAACCTACGGGTTCAATTCACCTTGGAAACTATTTCGGCGCTATCAAGAATTGGGTTGCCCTTCAGCCTGTGTACGATACACTTTTCTTCATTGTGGATCTGCATGCGATTACATTACCTCATGACACACAACAATTATCTAAGGATACAAAGTCAACTGCAGCCATTTACCTGGCATGTGGGGTGGATCCTTCAAAGGCTTCCGTTTTTGTCCAGTCTCATGTCCGTGCACATGTAGAATTGATGTGGCTGCTAAGTTCCATAACACCAATTGGCCGTCTAAACAGAATGATCCAGTTTAAAGAGAAATCTCGGAAGGCGGGAGATGATGAAGTTGGGGTTGCTCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACACGTGACATAGCTGAACGGGTTAATAATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGGCGAGGTGGTACTATATTTAAGGTTCCAGAGCCCCTTATACCTCCAACTGGAGCCCGGATTATGTCCTTAACTGATGGCCTGTCAAAGATGTCAAAGTCTGCACCCTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCGTTTCCAAGCTTGGAAATCGACAATCCTGAAAGGCCTGAATGTAATAATCTTCTCTCCATATATCAGCTCGCTTCTGGAAAAACAAAAGAGGAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGAACATTCAAACCTCTTTTAACAGATGCCTTGATTGACCATTTGCAACCCATTCAGGTTCGCTATGAGGAACTCATGTCAGATTCAGGTTATTTAGACAAAGTATTAAGAGAAGGTGCTAGGAATGCAGCAGATATAGCAGATGCTACGCTTCATAATGTTTACCAAGCAATGGGATTTTCGAGGAGACAGTGA 1194 0.438 MGVVSHYAVPSCFVPSLSCAASTLLRSRLRPTIRCCTTLSATSPETPTPSPTTIKKRVVSGVQPTGSIHLGNYFGAIKNWVALQPVYDTLFFIVDLHAITLPHDTQQLSKDTKSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSITPIGRLNRMIQFKEKSRKAGDDEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGTIFKVPEPLIPPTGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPSLEIDNPERPECNNLLSIYQLASGKTKEEVVQECQNMNWGTFKPLLTDALIDHLQPIQVRYEELMSDSGYLDKVLREGARNAADIADATLHNVYQAMGFSRRQ* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0646 397 TIGRFAM trpS: tryptophan--tRNA ligase 55 393 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mal2g0646 397 Hamap Tryptophan--tRNA ligase [trpS]. 55 394 IPR024109 GO:0004830
Mal2g0646 397 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 64 73 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mal2g0646 397 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 50 393 - -
Mal2g0646 397 CDD TrpRS_core 57 345 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mal2g0646 397 SUPERFAMILY Nucleotidylyl transferase 56 393 - -
Mal2g0646 397 PANTHER BNAA04G15180D PROTEIN 50 393 - -
Mal2g0646 397 Pfam tRNA synthetases class I (W and Y) 57 349 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mal2g0646 397 Gene3D - 253 363 - -
Mal2g0646 397 PRINTS Tryptophanyl-tRNA synthetase signature 118 137 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mal2g0646 397 PRINTS Tryptophanyl-tRNA synthetase signature 195 216 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mal2g0646 397 PRINTS Tryptophanyl-tRNA synthetase signature 260 270 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mal2g0646 397 PRINTS Tryptophanyl-tRNA synthetase signature 68 84 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mal2g0646 397 Gene3D HUPs 58 392 IPR014729 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0646 K01867 - gmx:100780314 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0646 2 7621468 7631822 Mal2g0646 2 7621468 7631822 ECH