LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g0550	ATGGATTCAGCAATATCTTCAACTTATGCATCATCCTCCACTACCAATCTAACCAAAATCAGTAGTGAAGGAGTTGGAAGAAGAACCAGAAACACTGTGTTCTTGGGAGAAACTACAAAGGGAAGTCTAAGCCCAAAATTTCTCACCATTCAATCACCCAAAACTTCACAAACTCACATCAACCTTAAAAATGGAGCTTCACACACCATTCTCACTTCAGGAATCAACGATTATCAAGAGTCCACGGCTTTTCAAGAGGGACCCTATTTTGAGACTCCAAAAGCTGACCCAAAAAGTGTAGCTTCAATCATACTGGGTGGTGGTGCTGGAACTCGCCTTTTTCCTCTTACTAGCAAAAGAGCCAAACCTGCGGTTCCAATTGGAGGGTGTTACAGACTCATAGATATCCCTATGAGCAATTGCATCAATAGTGGCATTAGAAAAATCTTCATTTTGACGCAGTACAATTCTTTCTCCCTCAACCGTCACTTGTCTCGCGCATACAATTTTGGAAATGTCTCCACTTTTGGGGAGGGTTTTGTGGAGGTATTGGCTGCAACTCAAACATCTGGAGAAGCTGGGAAGAAATGGTTCCAAGGGACAGCGGATGCTGTGAGGCAATTTATATGGGTTTTTGAGGATGCTAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTATCGAATGAACTATATGGATTTTGTGCAGAAACATATCGACACAAATGCTGATATCACAGTTTCATGTCTTCCCATGGATGACAGTCGAGCATCAGACTATGGGCTGATGAAAATTGATGGAACGGGACGGATTATACAGTTTGCAGAAAAGCCCAAGGGACCAGATCTGAAAGCAATGCGTGTTGATACCACGGTTCTTGGGTTATCTCCAGAAGAAGCAAAGGAAAATCCTTATATTGCGTCCATGGGTGTCTATGTGTTTAGAACTGAGACCCTACTTGAACTATTAAGATTGAACGGTTCTACATGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAGCGGTCACAATGTCCAGGCATATTTGTTCAATGACTATTGGGAAGATATTGGAACCATAAAGTCCTTCTTTGATGCAAATTTGGCCCTGACAGAACATCTTCCAAAATTTCAATTCTATGATCCAAAGACACCTTTCTTCACTTCCCCGAGATTCCTGCCACCCACTAAAGTAGAAAAATGCAAGATTGTGGATGCTATTATTTCTCACGGTTGCTTCTTGAGGGAATGTAGCGTTCAACATTCTATTGTTGGAATACGATCACGTTTAGAATCTGGTGTGGAGCTTCAGGATACCATGGTGATGGGTGCTGATTACTATCAAACTGAGACTGAAATTGCATCTCTGCTGGCAGAAGGAAATGTCCCAATTGGTGTTGGAGAAAATACCAAAATAAGGAATTGTATAATTGACAAGAATGCGAAAATCGGAAGAAATGTGATCATTACAAATGCCGATGGTGTTGAAGAAGCAGACAGAACTAAGGAAGGATTTTACATTAGGTCCGGCATCACCGTTATACTGAAGAATGCTACAATTAAAGATGGAACAGTTATATGA	1602	0.4095	MDSAISSTYASSSTTNLTKISSEGVGRRTRNTVFLGETTKGSLSPKFLTIQSPKTSQTHINLKNGASHTILTSGINDYQESTAFQEGPYFETPKADPKSVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQYNSFSLNRHLSRAYNFGNVSTFGEGFVEVLAATQTSGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMNYMDFVQKHIDTNADITVSCLPMDDSRASDYGLMKIDGTGRIIQFAEKPKGPDLKAMRVDTTVLGLSPEEAKENPYIASMGVYVFRTETLLELLRLNGSTCNDFGSEIIPSAVSGHNVQAYLFNDYWEDIGTIKSFFDANLALTEHLPKFQFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGIRSRLESGVELQDTMVMGADYYQTETEIASLLAEGNVPIGVGENTKIRNCIIDKNAKIGRNVIITNADGVEEADRTKEGFYIRSGITVILKNATIKDGTVI*	534

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g0550	533	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	106	125	IPR005836	GO:0005978\|GO:0008878
	Mal2g0550	533	SUPERFAMILY	Trimeric LpxA-like enzymes	395	533	IPR011004	-
	Mal2g0550	533	Gene3D	Hexapeptide repeat proteins	399	533	-	-
	Mal2g0550	533	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	197	205	IPR005836	GO:0005978\|GO:0008878
	Mal2g0550	533	CDD	LbH_G1P_AT_C	401	527	-	-
	Mal2g0550	533	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	89	398	IPR029044	-
	Mal2g0550	533	TIGRFAM	glgC: glucose-1-phosphate adenylyltransferase	101	498	IPR011831	GO:0005978\|GO:0008878
	Mal2g0550	533	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	312	322	IPR005836	GO:0005978\|GO:0008878
	Mal2g0550	533	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC	8	533	-	-
	Mal2g0550	533	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	100	494	IPR029044	-
	Mal2g0550	533	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	8	533	IPR011831	GO:0005978\|GO:0008878
	Mal2g0550	533	CDD	ADP_Glucose_PP	103	364	-	-
	Mal2g0550	533	Pfam	Nucleotidyl transferase	102	379	IPR005835	GO:0009058\|GO:0016779

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g0550	Mal-Chr2	6439847	6443863	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g0550	K00975		-	gmx:100793757	867.455

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal2g0550	2	6439847	6443863	Mal2g0550	2	6439847	6443863	ECH