Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0539 ATGATCTCTCAGTTCTTCGTGCTTTCTCAAAGAGGAGACAACATCGTCTTCCGCGACTATCGTGGTGAAGTTCAAAAGGGAAGCGCTGAAACTTTTTTCCGTAAAGTTAAATTCTGGAAAGAGGACGCTGATGGAGATGCTCCACCTGTTTTTAATGTAGATGGTGTAAACTATTTCCACGTGAAGGTTGCTGGGTTGTTATTTGTTGCTACAACTAGAATCAATGTTTCCTCTTCTCTTGTTTTGGAACTTTTACATAGAACTGCACGTGTCATCAAAGATTACCTTGGTGTTCTTAATGAAGACTCTTTTCGAAAGAATTTCGTCCTTGTCTATGAACTTCTTGATGAAGTCATTGATTTTGGTTATGTGCAAACAACTTCTACCGAGGTTTTGAAGTCATATGTTTTCAATGAGCCAATTGTGATTGAGTCTGCACAGATGCCCCTTGGACCTGCTTCTATTTTTATGCAAGGGACCAAAAGAATGCCAGGTACAGCTATTACAAAATCTGTTGTTGCTAATGAACCTGGTGGTAGGAAGAGGGATGAGATCTTTGTTGATGTGATTGAGAAAATAAGTGTCACATTCAATTCTAGTGGATTTATACTCACTAGTGAGATTGATGGTACCATTCAAATGAAGAGTTATCTTACTGGTAACCCAGAGATTCGACTTGCTCTCAATGAGGACCTGAGTATAGGAACAAGTGATTATAGAGGTTCGGGTGCTGTGATTTTAGATGATTGTAACTTCCATGAGTCTGTACACCTTGATAGTTTTGATATTGACCGAACTTTATCTTTGGTACCACCAGATGGTGAATTTCCTGTCATGAATTATCGTATAACTCAAGCATTTAAGCCACCCTTTCGTATTAATGCATTGATTGAAGAAACAGGACCACTCAAGGCTGAAGTGACCATTAAAGTGCGAGCTGAGTTCAACTCAAGCATCAATGCTAACACTGTTCTTGTACAGATGCCACTTCCGACATTTACAGCTCGTGTTAATTTTGAGTTAGAACTTGGAGCGGTTGGACACACCACTGATTTTAAGGAAGCAAATAAAAAACTGGAATGGGCACTAAAAAAGGTTGTTGGTGGATCTGAACATACTTTACATGCAAAGCTGACGTTTTCGCAGGAATTACATGGAAATATCATGAAAGAAGCAGGGCCTCTTAGCATGACATTCACCATACCTATGTACAATTCTTCAAGGCTTCAGGTGAAGTACTTGCAAATAGCAAAGAAGTCAAAAGCTCATAATCCATATCGATGGGTTAGATATGTAACCCAGGCAAACTCGTATGTCGCTCGGTTGTAA 1329 0.395 MISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDADGDAPPVFNVDGVNYFHVKVAGLLFVATTRINVSSSLVLELLHRTARVIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVIESAQMPLGPASIFMQGTKRMPGTAITKSVVANEPGGRKRDEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSDYRGSGAVILDDCNFHESVHLDSFDIDRTLSLVPPDGEFPVMNYRITQAFKPPFRINALIEETGPLKAEVTIKVRAEFNSSINANTVLVQMPLPTFTARVNFELELGAVGHTTDFKEANKKLEWALKKVVGGSEHTLHAKLTFSQELHGNIMKEAGPLSMTFTIPMYNSSRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0539 442 Gene3D - 1 141 - -
Mal2g0539 442 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Mal2g0539 442 PANTHER AP COMPLEX SUBUNIT MU 2 442 - -
Mal2g0539 442 CDD AP4_Mu_N 3 143 - -
Mal2g0539 442 CDD AP-4_Mu4_Cterm 177 442 - -
Mal2g0539 442 Gene3D Mu homology domain, subdomain B 289 441 - -
Mal2g0539 442 PIRSF AP_complex_mu 1 442 IPR001392 GO:0006886|GO:0016192|GO:0030131
Mal2g0539 442 PRINTS Clathrin coat assembly protein signature 247 274 IPR001392 GO:0006886|GO:0016192|GO:0030131
Mal2g0539 442 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Mal2g0539 442 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Mal2g0539 442 PRINTS Clathrin coat assembly protein signature 360 371 IPR001392 GO:0006886|GO:0016192|GO:0030131
Mal2g0539 442 Pfam Adaptor complexes medium subunit family 181 441 IPR028565 -
Mal2g0539 442 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 442 - -
Mal2g0539 442 Gene3D Mu homology domain, subdomain B 181 437 - -
Mal2g0539 442 Pfam Clathrin adaptor complex small chain 1 132 IPR022775 -
Mal2g0539 442 ProSiteProfiles Mu homology domain (MHD) profile. 182 441 IPR028565 -
Mal2g0539 442 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 181 441 IPR036168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0539 Mal-Chr2 6309855 6316113 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0539 K12402 - gmx:100800985 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0539 2 6309855 6316113 Mal2g0539 2 6309855 6316113 ECH