Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0450 ATGTTATCGCTTAACACCTCATGTGGATGTTGTGGCGTTTCCATAGCAACAAGAGCATTCCAATTTCACTTTCGAACTTCACCTTCACCATTTTTCTTCTCTCCCACTAACAACTTTAAATTCCGTTCCTCCATTGCGAAATCCGTTTCTACTTTCTCCGATGATTCGAACTCCACCGGAGAACCAAAATCGAATTACGCCGGTGTACGGTTGGAAGAAATCGTCGACGGTGGAATCAAATCTGGAAAATTGAGACTCGATAGTTGGATCTCTTCTCGCATCAATGGCATCAGTAGAGCTCGCGTTCAGTCAAGTATTAAAGCTGGACTCGTTCATGTCAATGGCCGTGTTGTTGATAAGGTTTCTTTCATTGTCAGAGCTGGGGATGAGATCAAGTGCACAATTGCAGAGTTGCAGCAGTTGAGAGCTGTGCCGGAAAACATACCTTTGGATATAGTTTATGAAGATGATCATTTGCTAGTCATAAATAAACCTGCTCACATGGTTGTGCATCCAGCACCTGGCAATACGTCTGGGACACTTGTAAATGGCATTCTTCACCATTGCAACCTGCCAAATGTTGAATTTTCTAAAGCGGAAGCTCTCTTAGATACAGAAGATTCTGATGATGAATTTAATGGCTTCTCATCCCAGTCAAGTTCTTGTGAAGATTCTAGATTGTCTACGGCATCAATTCGCCCAGGGATTGTACACAGGTTAGATAAAGGCACGAGTGGGTTACTAGTTGTTGCTAAGGATGAACATTCTCATATGAAATTGTCCGAACAGTTCAAGCTTCGCACTATAAAGAGGATCTATGTTAGTCTCACTGCTGGGGTACCTACTCCAGTTGCTGGGCGTGTTGAGGTTCCGGTTGGTCGTGATCCTAATAACCGGCTTCGTATGACCGCTGTAGCTGGATCAGTTAATTCTGTAAAGGCCCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTGGCTGGGGGTAGCTGTGCATTGGTTGAGTGGAAGTTGGAAACTGGACGTACTCATCAGATCCGTGCACATGCTAAGTATTTGGGTGTACCTCTGCTTGGTGACGAGGTATATGGAGGAACGAAAAGCATGGTCTTGTCACTGCTACGGCCACGAACAACTCCGAGTTTGCATAGCGAAATGTTTAAAATAGTTTCTGAGCTAGATAGGCCTTGCCTTCATGCGTTGACTCTTGGGTTTCAGCATCCTCATACAGGGGAGCAGGTGCACTTTTCATGCGACCCCCCTGTAGATTTTAATGACATTTTGAGCCAGTTTCGTAGAATTGGCAGTGAAAGTATTTCTCATTCAAAGGCCAAATTTTTAAAAGGGGTATTGTAA 1359 0.44 MLSLNTSCGCCGVSIATRAFQFHFRTSPSPFFFSPTNNFKFRSSIAKSVSTFSDDSNSTGEPKSNYAGVRLEEIVDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKVSFIVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKAEALLDTEDSDDEFNGFSSQSSSCEDSRLSTASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTIKRIYVSLTAGVPTPVAGRVEVPVGRDPNNRLRMTAVAGSVNSVKARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTPSLHSEMFKIVSELDRPCLHALTLGFQHPHTGEQVHFSCDPPVDFNDILSQFRRIGSESISHSKAKFLKGVL* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0450 452 CDD PseudoU_synth_RluA_like 159 406 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mal2g0450 452 SUPERFAMILY Pseudouridine synthase 144 432 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mal2g0450 452 SUPERFAMILY Alpha-L RNA-binding motif 83 171 - -
Mal2g0450 452 SMART s4_6 84 149 IPR002942 GO:0003723
Mal2g0450 452 CDD S4 85 163 - -
Mal2g0450 452 ProSitePatterns Rlu family of pseudouridine synthase signature. 237 251 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mal2g0450 452 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 83 434 - -
Mal2g0450 452 Gene3D Pseudouridine synthase 141 421 - -
Mal2g0450 452 Gene3D - 69 140 IPR036986 GO:0003723
Mal2g0450 452 Pfam RNA pseudouridylate synthase 158 351 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mal2g0450 452 ProSiteProfiles S4 RNA-binding domain profile. 84 157 - -
Mal2g0450 452 Pfam S4 domain 85 131 IPR002942 GO:0003723
Mal2g0450 452 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 83 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0450 Mal-Chr2 5126337 5132270 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0450 K06180 - gmx:100810383 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0450 2 5126337 5132270 Mal2g0450 2 5126337 5132270 ECH