Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0413 ATGGCTTTCTCCACCTCTTCTTTACTTTCTACAAACTTCTTAGGAGCAAGAAACATTCCAACCCCTAAAACAACCAAACCATCCATTTCACTACCAATTTTCTTCAAAACTAAATTCTTAAACTTTCAAAAACCAAACAATGATAATAATTCAGAACCACTCAAATCAGCTGCTGTATCGGCTCTTATCTTATCCTCTATGTCTCTTAACATCACTCCGGCAGCTTTCGCCGCCGATAACATCACACCACCACCACAACCACCGGTACTCGAAGCACAACCAAACCAACTAAACCCCGCAAATTCAACTTCACCTTTCTCTCAAAACATTTCACTCACAGCACCAAAACCACAAGCACAATCTTCCACTGATCTTCCCGATGGTAGCCAGTGGCGTTACAGTGAATTTCTGAACGCAGTGAAGAAAGGAAAAGTTGAACGAGTTAGGTTCAGTAAAGACGGTTCTGTCCTTCAACTAACCGCCGTTGATGGACGGAGAGCAAACGTTACCGTTCCCAACGACCCTGACCTTATCGATATTCTAGCAATGAACGGCGTTGATATTTCCGTTTCCGAAGGTGAACAAGGTAACGGTTTGTTCAGTTTCGTTGGTAGTTTATTGCTACCGTTCCTTGCATTTGCGGGTTTGTTCTTGATTTTCCGTAGAGGTCAAGGAGGACCCGGTGGGCCTGGTGGGCTTGGTGGGCCCATGGATTTCGGTAGATCTAAATCAAAATTCCAGGAAGTACCGGAAACAGGGGTTACATTTGCTGATGTGGCCGGTGCTGATCAAGCGAAATTGGAACTACAAGAAGTTGTTGATTTCTTGAAGAATCCTGATAAGTACACTGCTTTAGGTGCTAAGATTCCTAAAGGGTGTCTTTTGGTGGGGCCACCTGGAACTGGAAAGACATTGTTGGCGAGGGCGGTGGCCGGTGAAGCCGGTACACCGTTCTTTTCTTGTGCAGCTTCGGAGTTTGTGGAACTGTTTGTAGGTGTTGGTGCTTCTAGGGTTAGGGATTTGTTTGAGAAGGCGAAGTCGAAGGCGCCGTGCATTGTGTTTATTGATGAGATTGATGCTGTTGGGAGACAGAGAGGAGCTGGACTTGGTGGTGGGAATGATGAGAGGGAACAAACTATTAATCAGCTTTTGACTGAGATGGATGGTTTTTCTGGTAATTCTGGTGTTATTGTTTTGGCTGCTACTAATAGACCTGATGTTCTTGATTCTGCTTTGCTTAGACCTGGAAGGTTTGATAGGCAAGTTACTGTCGATAGACCTGATGTTGCTGGTAGAGTTAAAATTCTTCAGGTGCATTCTAGAGGAAAAGCACTTGCAAAGGATGTTGACTTTGATAAAATTGCAAGGAGAACTCCAGGGTTCACAGGGGCTGATCTGCAGAATCTGATGAACGAAGCAGCTATTCTTGCAGCCAGGCGTGACCTCAAGGAAATAAGTAAAGATGAGATAGCTGATGCGCTTGAAAGGATCATCGCTGGACCAGAAAAGAAAAATGCCGTTGTTTCAGAAGAGAAGAAGAAATTAGTAGCCTATCATGAGGCTGGCCATGCTTTAGTAGGTGCTTTGATGCCTGAGTATGACCCTGTAGCCAAGATATCTATTATACCTCGTGGCCAAGCTGGTGGTCTCACTTTTTTTGCTCCTAGTGAAGAGAGGCTTGAGTCTGGATTGTACAGTAGAAGCTACTTGGAAAATCAGATGGCGGTTGCACTTGGAGGAAGGGTTGCCGAAGAGGTTATTTTTGGCCAAGAAAATGTCACCACTGGGGCATCAAATGACTTCATGCAAGTTTCACGAGTGGCGAGACAGATGGTTGAGAGATTCGGGTTCAGCAAAAAAATTGGACAGGTTGCCATTGGTGGAGGTGGTGGAAATCCATTCTTGGGACAACAGATGTCATCACAAAAAGATTATTCCATGGCAACTGCTGATATAGTGGATAAGGAAGTTAGAGAACTGGTAGACAAAGCATATGAGAGGGCAACCCAAATTATCAACACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAGAAAGAAACAGTTGATGGTGAAGAGTTCATGAGTCTATTTATTGATGGAAAAGCAGAATTGTATGTTTCATAG 2136 0.4415 MAFSTSSLLSTNFLGARNIPTPKTTKPSISLPIFFKTKFLNFQKPNNDNNSEPLKSAAVSALILSSMSLNITPAAFAADNITPPPQPPVLEAQPNQLNPANSTSPFSQNISLTAPKPQAQSSTDLPDGSQWRYSEFLNAVKKGKVERVRFSKDGSVLQLTAVDGRRANVTVPNDPDLIDILAMNGVDISVSEGEQGNGLFSFVGSLLLPFLAFAGLFLIFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGGGGNPFLGQQMSSQKDYSMATADIVDKEVRELVDKAYERATQIINTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVS* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0413 711 ProSitePatterns AAA-protein family signature. 396 414 IPR003960 GO:0005524|GO:0016887
Mal2g0413 711 MobiDBLite consensus disorder prediction 93 127 - -
Mal2g0413 711 PANTHER METALLOPROTEASE M41 FTSH 54 703 - -
Mal2g0413 711 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 201 700 IPR005936 GO:0004176|GO:0004222|GO:0016020
Mal2g0413 711 MobiDBLite consensus disorder prediction 79 127 - -
Mal2g0413 711 SMART AAA_5 289 428 IPR003593 -
Mal2g0413 711 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 54 703 - -
Mal2g0413 711 Gene3D - 244 426 IPR027417 -
Mal2g0413 711 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 11 711 IPR005936 GO:0004176|GO:0004222|GO:0016020
Mal2g0413 711 Pfam AAA+ lid domain 448 489 IPR041569 -
Mal2g0413 711 CDD AAA 260 425 - -
Mal2g0413 711 Pfam Peptidase family M41 507 700 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Mal2g0413 711 Gene3D - 427 502 - -
Mal2g0413 711 SUPERFAMILY FtsH protease domain-like 507 701 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Mal2g0413 711 Gene3D Peptidase M41 503 706 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Mal2g0413 711 Gene3D - 125 197 - -
Mal2g0413 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 497 IPR027417 -
Mal2g0413 711 Pfam ATPase family associated with various cellular activities (AAA) 294 425 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0413 Mal-Chr2 4594587 4598533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0413 250 702 Miscellaneous Gene Families AT5G53170 49.780 1.37e-135 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0413 K03798 - nnu:104587097 1134.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0413 2 4594587 4598533 Mal2g0413 2 4594587 4598533 ECH