Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0388 ATGGACCTTCTTCCTCGTCTAGGGATTCTATCTTTTCTATTACAGGTTTGCTTAATTCTATCTTTAACAGAAGCAAAAACTTTGGCAGCTAATGATAGAACACGAGGGGAAAAGCATTCTGCGGATTATTGTGCAATGTATGACCTATGTGGAAAGCGAAGCGATGGTAAAGTACTGAATTGTCCATATGGTTCTCCGGCTGTGAAGCCAGATGATTTGCTTTCATCAAAGATCCAAAGTTTATGTCCAACAATTACCGGGAACGTTTGCTGTACAGAAGTTCAGTTTGACACATTAAAGGCGCAAGTGCAACAGGCAATTCCTCTTCTTGTAGGCTGTCCAGCATGTTTAAGAAACTTTCTGAATCTATTCTGCGAGCTTACTTGCTCTCCAAATCAGAGTTTATTTATCAATGTGACTACAGTGGACAAGGTTGGTGGTAATTTGACAGTGGGTGGCATCAATTATTTTGTAAGTGACGCATTTGGTGAAGGGTTGTATAACTCCTGCAAGGATGTAAAGTTTGGCACCACGAATTCTCTAGCTATGCAATTTATTGGCGCCGGTGCTCAAAATGTTAAAGAGTGGTTTGCTTTTATTGGTAAAAAAGCAGCCCCTGATGATGTTGGTTCACCATATGCAATTATGTTCCCGCCAAATGCAACCAAGTCATCTGGGATGGAGCCTATGAATGTTTCAGCCTATTCATGCGGTGATACTTCTCTTGGTTGTTCTTGTGGTGACTGTCCTTCATCTTCAGTATGCTCTAGTTCATCTTCAACTACCACCAAAAAGAGGGATTCATGCTCCTTGAAAGTTGGTTCTTTAATGGTGAAGTGTGTTGACTTGACTTTAACAGTTTTATACATCGTACTGTTATTTGTGTTCTTGGGTTGGGGATTGTATTATCGGACAAGGGGAAGAAAGCCAGCATATAGAACAAAATCAGTGTCTAATGTTAATAGTGGTGGGCAGCTGCATTCTCGTAATCAGGAGAAGGACGAGAACCTCCCTATGCACCAGATTATTGAAGATGTTTCACAAAACAAAAACGAAGTACGTCTTTCAGCTGTGCAAGGATACATGTCAAATTTTTACAGGAAGTATGGATCATACGTAGCTAGAAATCCAATTATGGTCTTGGCTTCATCTTTGGCTATAGTTATTCTACTTTGTCTAGGTCTAATCAGATTCAAGGTTGAGACACGGCCTGAGAAGCTCTGGGTGGGACCTGGGAGTAGAGCAGCTGAAGAGAAGCAGTTTTTTGACAGCCATCTTGCTCCGTTTTACAGAATTGAACAGCTCATACTGGGAACAGTTCCAGATCATGTGAATGGTACATCGCCAAGAATTGTGTCAGAGGATAACATTAAGTTTCTGTTTGAAGTACAAAAGAAGGTTGATGCAATTCGTGCTAATTATTCTGGCTTGATGGTATCTCTGCAAGACATCTGTATGAAGCCACTAGACAAAGAATGTGCCACTCAAAGCATTCTGCAGTACTTCAAAATGGATCCCAGCAATTTCGACAATTATGGTGGAGTCGAGCATCTCCCTTACTGTTTTGAGCATTATTCCTCGGCAGATCATTGTATGAGTGCATTTAAGGGTCCTCTTGATCCTAGCACCGTATTAGGAGGTTTTTCTGGGAATGACTATTCTGGGGCTTCTGCATTTATTGTAACTTACCCAGTAAATAATGCTATTGATGAAGAAGGCAATGGAAATGCAAAGGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTAGTGAAGGATGAGTTGTTACCAATGGCACAATCGAAAAATTTGACACTTGCTTTTTCATCTGAAAGCTCTATTGAGGAAGAATTGAAAAGAGAAAGTACTGCAGATGTTATTACTATATTGGTCAGCTATCTTGTGATGTTTGCTTATATATCTCTTACTTTAGGGGATACGCCCCAGCTTTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGTCTTTCAGGAGTAATTCTTGTCATGCTGTCTGTCCTTGCATCTGTTGGAATTTTTAGTGCTCTTGGTGTAAAATCTACTCTGATCATCATGGAAGTTATCCCATTTCTTGTTCTAGCTGTTGGGGTGGATAATATGTGTATACTGGTTCATGCTGTGAAAAGGCAACAGCTGGAGTTGCCTTTAGAAAGACGGATAAGCAATGCACTTGTGGAAGTTGGACCATCAATAACATTGGCTAGTTTATCAGAGGTTTTAGCATTTGCAGCTGGAAGCTTCATTTCCATGCCTGCATGTCGTGTCTTCTCCATGTTTGCAGCATTGGCTGTTCTTTTGGACTTTCTCCTGCAAGTTACTGCATTCGTAGCTCTGATAGCTCTTGACTCTTTGAGAGCAGAGAATAAGAGGGTTGATTGTTTTCCATGCATAAAAGTGCATTCTTTGCATGCAGATCCTGATAAAGGCATTGAACAAAGGAAACCTGGTTTGTTGGCACGATATATGAAGGAGGTTCATGCTCCAATTCTAAGTATTTGGGGAGTAAAAATAGTTGTCATTGCAATTTTTCTGGCATTTGCATTGGCTAGCATTGCTTTGAGCACTAGAATTGAACCTGGATTGGAGCAGGAGATTGTTCTTCCCCGAGACTCATATCTTCAGGGGTATTTCAATAATGTTACAGAATATCTCAGAATTGGGCCACCTTTGTATTTTGTTGTGAAGAACTATAACTACAGCTCAGAATCAACACATACAAATCAGCTTTGCTCCATAAGCCAATGCAATTCAGACTCTCTTTTAAATGAGATCGCTGAAGCGGCCCTAGTACCAGACACAAGTTATATTGCCAAGCCAGCTGCTTCTTGGCTCGATGATTATCTTGTGTGGGTATCTCCAGAAGCATTTGGTTGCTGCAGGAAGTTCACTAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGAAGACGACTCTTGTGTTTCAGTTGGAGTATGTAACGATTGCACAACGTGTTTCCGTCACTCAGATCTCAGCAATGATCGTCCTTCCACAACACAATTTAGGGAGAAACTGCCGTGGTTTCTTAGTGCTCTTCCATCTGCTGACTGTGCAAAAGGTGGTCATGGGGCGTACACCAGCAGTGTTGAACTGAAAGGCTATGACAGTGGCATTATTCAAGCATCATCATTCCGTACGTATCATACCCCATTAAACAAGCAGGTTGACTTTGTTAATTCCATGAGGGCTGCTCGAGAGTTCAGTTCAAGGGTTTCTGATTCTTTGAAGATGGAGATCTTCCCATATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTAATATATGGAAGACTGCATTGGTCAACCTTGCAATAGCTATTGGTGCAGTATTTATTGTGTGCTTGGTTATCACAGGCAGTTTATGGAGTTCAGCAATCATTTTGTTGGTGTTGACAATGATTGTTGTTGATCTTATGGGTATGATGGCCATTCTGAATATCCAATTGAATGCCATCTCAGTTGTCAACCTCGTTATGTCAGTGGGAATTGCTGTTGAGTTTTCTGTGCATTTGACTCATTCTTTCACTGTTACAAGTGGGGATAAAGATCAGCGTGTTAAGGAGGCTCTAGGTACAATGGGTGCTTCAGTCTTCAGTGGTATCACACTAACAAAGTTGGTTGGAGTCATCGTTCTTTGCTTCTCAAGAACTGAAGTTTTTGTGGTTTATTACTTTCAAATGTACTTGTCATTAGTACTTCTTGGTTTTCTGCACGGACTTGTTTTCTTGCCGGTGGTATTAAGCATGTTTGGTCCACCTTCAAGATGTACAAATACTGACGAAGGGGAAGATCGTTCATCAAACTAA 3858 0.4093 MDLLPRLGILSFLLQVCLILSLTEAKTLAANDRTRGEKHSADYCAMYDLCGKRSDGKVLNCPYGSPAVKPDDLLSSKIQSLCPTITGNVCCTEVQFDTLKAQVQQAIPLLVGCPACLRNFLNLFCELTCSPNQSLFINVTTVDKVGGNLTVGGINYFVSDAFGEGLYNSCKDVKFGTTNSLAMQFIGAGAQNVKEWFAFIGKKAAPDDVGSPYAIMFPPNATKSSGMEPMNVSAYSCGDTSLGCSCGDCPSSSVCSSSSSTTTKKRDSCSLKVGSLMVKCVDLTLTVLYIVLLFVFLGWGLYYRTRGRKPAYRTKSVSNVNSGGQLHSRNQEKDENLPMHQIIEDVSQNKNEVRLSAVQGYMSNFYRKYGSYVARNPIMVLASSLAIVILLCLGLIRFKVETRPEKLWVGPGSRAAEEKQFFDSHLAPFYRIEQLILGTVPDHVNGTSPRIVSEDNIKFLFEVQKKVDAIRANYSGLMVSLQDICMKPLDKECATQSILQYFKMDPSNFDNYGGVEHLPYCFEHYSSADHCMSAFKGPLDPSTVLGGFSGNDYSGASAFIVTYPVNNAIDEEGNGNAKAVAWEKTFIQLVKDELLPMAQSKNLTLAFSSESSIEEELKRESTADVITILVSYLVMFAYISLTLGDTPQLSSFYISSKVLLGLSGVILVMLSVLASVGIFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLERRISNALVEVGPSITLASLSEVLAFAAGSFISMPACRVFSMFAALAVLLDFLLQVTAFVALIALDSLRAENKRVDCFPCIKVHSLHADPDKGIEQRKPGLLARYMKEVHAPILSIWGVKIVVIAIFLAFALASIALSTRIEPGLEQEIVLPRDSYLQGYFNNVTEYLRIGPPLYFVVKNYNYSSESTHTNQLCSISQCNSDSLLNEIAEAALVPDTSYIAKPAASWLDDYLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPEDDSCVSVGVCNDCTTCFRHSDLSNDRPSTTQFREKLPWFLSALPSADCAKGGHGAYTSSVELKGYDSGIIQASSFRTYHTPLNKQVDFVNSMRAAREFSSRVSDSLKMEIFPYSVFYMFFEQYLNIWKTALVNLAIAIGAVFIVCLVITGSLWSSAIILLVLTMIVVDLMGMMAILNIQLNAISVVNLVMSVGIAVEFSVHLTHSFTVTSGDKDQRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLSLVLLGFLHGLVFLPVVLSMFGPPSRCTNTDEGEDRSSN* 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0388 1285 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1077 1268 - -
Mal2g0388 1285 TIGRFAM 2A060601: Niemann-Pick C type protein family 44 1268 IPR004765 GO:0005319|GO:0016021
Mal2g0388 1285 Pfam Patched family 1058 1267 IPR003392 GO:0016021
Mal2g0388 1285 Pfam Patched family 471 903 IPR003392 GO:0016021
Mal2g0388 1285 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 11 1284 - -
Mal2g0388 1285 PANTHER PATCHED FAMILY PROTEIN 11 1284 - -
Mal2g0388 1285 Pfam Niemann-Pick C1 N terminus 42 274 IPR032190 -
Mal2g0388 1285 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1075 1272 - -
Mal2g0388 1285 Gene3D Multidrug efflux transporter AcrB transmembrane domain 577 794 - -
Mal2g0388 1285 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 582 787 - -
Mal2g0388 1285 ProSiteProfiles Sterol-sensing domain (SSD) profile. 624 787 IPR000731 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0388 Mal-Chr2 4309028 4328470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0388 38 1284 Miscellaneous Gene Families AT1G42470 73.055 0.0 1850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0388 K12385 - gmx:100813262 2142.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0388 2 4309028 4328470 Mal2g0388 2 4309028 4328470 ECH