Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0205 ATGTCGTGTTTATTGCCACACTTCAACTGCATCACAACTCCTATCCCTATCCCTACCCACCGCCATCATCATCATCATCTCATTCTTCTTCAGTCAGCGAAAACAACAAGACACAAATTGTATTTCCGTCCACAATGTATTTTGTCTCCTTCAACTTCAACGGCACTCCTTGATTTCAAATTCGACGATGCTGTTGCTGCAAAAACACCTTGGCCCTATGTCTCTCAGGCACCAACCTCATCTGCAGAATCAATTCTTACTAGTGAAGACGCTGTTATAGCTGCTGCTGCTTCTGAAGCTCTTGCTCTTGCTAAAGCTGCTGCAAAGCTTGCAAAGGATGCTACTCTATTTGTCAAAAACAACCCCCCACAACCACAACTTCAACATTCACAACCACAACTTCCTTCCACCACCTCTGAAAATTTACTTCTCAAATGGGTTCAACACATGGAAGCAGCAGAATCCATGGAACATCTTCACATTAGCCCCACCCAAGAGGAAGAAGAGGAAGAGGAGTTTGATGACGAGGAGCCTACCTCTCAAGAACTTCAAGATGCGGAGGAACAACTTTCCGATACTAGTATAGATGCAAGATCTGGACGCCAAACAGAAAGAAAAGCTAGAAGAGTCAGAGCATCTGGGAAGGCTGCCACAAACATCGTGTCCTTCAAGTCTGGATCCACCAGCAGGAAAAAGCGTGTTCGTACACAAGAGGTTGACTATTCTGATCCACTGCGTTACTTAAGAACAACAACCAGAACGACAAGGCTTCTTACTCCATCCGAAGAAATTAAGTTGTCTGAAGGAATACAGGACATGATAAAGCTCGAAAAACTTCAAGAGGATCTTGCAGAAAAATGTGGTGGCCAGCCCACATTTGCTCAATGGGCTACAATGGCAGGGGTAGATCAGAAGACCCTAAGAAAACGTTTAAATTATGGTGTATTTTGCAAAGAAAAAATGATTAAAAGCAATATACGACTAGTCATATCAGTTGCTAAGAACTATCAGGGATCTGGGATGAGTCTGCAAGATCTAGTCCAGGAAGGATGCCGCGGGCTTGTAAGAGGTGCAGAGAAGTATGATGCTTCTAAGGGTTTTAAGTTCTCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTTTCTGTTCAGTCAAGAACTATTCGCTTGCCGTTCCACATGGTGGGGGCAACTTACAAAGTGAAGGAGGCAAGAAAACAATTGTACAGTGAAAATGGAAGACAGCCTGACGATGAAGAAGTTGCCGAAGCAACTGGGCTGTCGATGAAGAGGCTTAGTGCTGTACTTTTGACCCCAAAAGCTCCCAGATCTCTAGAACAGAAAATTGGGATCAACCAGAGTCTTAAACCTTCAGAAGTACTCGCTGATCCTGAAGCTGAAACAGCCGAAGAACAGCTCATTAAGCAGTTCATGAAAAAGGACCTGGAAAAGGTACTAGACAGTCTCAATCCAAGAGAGAAACAGGTGATTAGATGGAGATTTGGTATGGATGATGGAAGGATGAAGACACTGCAAGAGATTGGGGAAATGATGGGTGTGAGTAGGGAGAGAATTAGACAAATTGAGTCATGTGCTTTTAGGAAGCTTAAGAACAAGAAGAGAGCCAAGCATTTGCAGCAGTATTTGGTTTCATAA 1668 0.4359 MSCLLPHFNCITTPIPIPTHRHHHHHLILLQSAKTTRHKLYFRPQCILSPSTSTALLDFKFDDAVAAKTPWPYVSQAPTSSAESILTSEDAVIAAAASEALALAKAAAKLAKDATLFVKNNPPQPQLQHSQPQLPSTTSENLLLKWVQHMEAAESMEHLHISPTQEEEEEEEFDDEEPTSQELQDAEEQLSDTSIDARSGRQTERKARRVRASGKAATNIVSFKSGSTSRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTPSEEIKLSEGIQDMIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQSLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYLVS* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0205 555 MobiDBLite consensus disorder prediction 166 183 - -
Mal2g0205 555 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 242 391 IPR013325 GO:0003700|GO:0006352|GO:0006355
Mal2g0205 555 Pfam Sigma-70 region 2 321 390 IPR007627 GO:0003700|GO:0006352|GO:0006355
Mal2g0205 555 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 319 543 IPR014284 GO:0003700|GO:0006352|GO:0006355
Mal2g0205 555 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 389 440 IPR013324 -
Mal2g0205 555 Gene3D - 475 555 IPR036388 -
Mal2g0205 555 Gene3D - 394 471 IPR036388 -
Mal2g0205 555 PIRSF Sigma_factor_SigC 13 555 IPR016262 -
Mal2g0205 555 ProSitePatterns Sigma-70 factors family signature 2. 514 540 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal2g0205 555 Gene3D RNA Polymerase Primary Sigma Factor 124 393 - -
Mal2g0205 555 PRINTS Major sigma-70 factor signature 369 377 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal2g0205 555 PRINTS Major sigma-70 factor signature 493 505 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal2g0205 555 PRINTS Major sigma-70 factor signature 529 540 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal2g0205 555 PRINTS Major sigma-70 factor signature 345 358 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal2g0205 555 PRINTS Major sigma-70 factor signature 514 529 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal2g0205 555 MobiDBLite consensus disorder prediction 159 215 - -
Mal2g0205 555 Pfam Sigma-70 region 3 402 476 IPR007624 GO:0003700|GO:0006352|GO:0006355
Mal2g0205 555 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 33 554 - -
Mal2g0205 555 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 453 552 IPR013324 -
Mal2g0205 555 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 33 554 - -
Mal2g0205 555 Pfam Sigma-70, region 4 489 541 IPR007630 GO:0003700|GO:0006352|GO:0006355
Mal2g0205 555 CDD Sigma70_r4 483 541 - -
Mal2g0205 555 MobiDBLite consensus disorder prediction 191 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0205 Mal-Chr2 2562306 2565897 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0205 - - aprc:113864822 718.768