Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0203 ATGAGCATGGAAGGATTGGCGGTTCCACTCCCACATCTCCTGCCATTGCTGCCGCTTCCAAAACTTGCTGCCATTCCCACTGCTACTTCTACTTCCATTCTCAACGCAGCAGCAGGAGGAGGAGGATTTATCTCTCTCAAACAACTAGGTCGACATCATAGTCGTCGTTTTCTTCCCTTGTGTACATCATCATCATTATCGCACTCTCAAGAGATTCCAGTAGATGATAATTGTGTAAGTGGAGATTCCATACGGGAAAGATTTCTGAGTTTTTATGCTTCCCGTGGTCACAAGGTCCTTCCAAGTGCTTCTCTCGTTCCAGATGACCCCACCGTTCTCCTCACTATCGCCGGCATGCTTCAGTTCAAGCCTATCTTCCTTGGAAAGCTTCCTAGACAAGTCCCTCGTGCCACTACTTCCCAACGCTGCATCCGTACTAATGATATCAATAATGTTGGCCATACCTCACGACATCACACCTTCTTTGAGATGCTTGGAAACTTCAGCTTTGGCGATTACTTCAAAAAACAAGCTATTCAATGGGCATGGGACTTATCTACCGTTGAGTTTGGTTTGCCTCCAGAAAGATTATGGATTAGTGTTTACCAAGACGATGATGAGACTTTTCAATTATGGACTCAACAGGTTGGTGTCCCTGTTGAGCGAATTAAGAGGTTGGGTGAAGAAGATAACTTTTGGACCAGTGGAGTCACCGGTCCCTGCGGTCCTTGCTCCGAAATTTATTATGATTTTCATCCTGAGAGGGGATACGCCGATGCCGATCTTGGTGATGATACACGGTTTATAGAGTTCTACAATTTAGTATTCATGCAATTCAACAAAAAGGACGATGGTTCTCTTGAACCTCTAAAGCAGAAGAACATAGATACTGGGCTTGGTCTGGAGCGCATGGCTCGCATTCTTCAAAAGGCTCCAAACAATTATGAAACTGACTTGATTCTCCCCATCATAGAGAAGGCATCTGAATTAGCAAATGTTTCATACGGCATTTCTGATGACCAGACGAAGAGGTATCTGAAAATTGTAGGAGATCACATGCGTGCAATTGTGTTTCTCATCTCTGATGGCGTTGTACCATCAAATGTTGGGAGGGGTTATGTAGTTCGACGGCTTATCAGAAGAGTTGTTCGTACAGGCAGGTTACTTGGTATAAAAGGTGATGGTAGGGGAGACCATGAAGGAGCATTTTTACCTATTATTGCCGAGAAAGTATTAGAGTTAAGTACTTACATTGATGCTGATGTGAAGAACAGAGCACCCCGTATCCTTGAGGAGTTGAAGAGAGAAGAGCTTCGGTTTGTGCAGACGCTGGAGAGAGGAGAGAAGTTGCTTGAGGAGAAGCTTGCTGATGCTATATCAAGTGCTGAAAGAAATGGAACTGTACCTTGCTTGGCTGGTGAAGATGTGTTTATTTTGTATGATACTTATGGTTTCCCCATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTATTGACATGAATGGTTTCGATATTGAGATGGAGAAACAAAGGCGTCAATCTCAAGCTGCACACAATACTGTCAAGCTTGCCATTGGAAGTGGGACAAATATTGCAGACAGTGTACCTGACACCGAATTTATTGGATATGAAGGTCTTTATTGTAAAGCAATCGTAGCAAGCCTAGTGGTAAATGGTGATCCAGCTGTACAGGTTAGTGAAGGGAGTAATGTGGAAGTTTTGCTGAACAAGACTCCATTTTATGCTGAATCAGGAGGACAAATTGGAGATCATGGTTTTCTGTATATATCAGAGGGTGAGAATCAACCTAAAGCTGTTGTTGAGATAATAGATGTTCAGAAGTCTTTTGGTAATATATTTGTTCACAAGGGTATAGTCCAAAAGGGTGTTGTAGAAGTTGGCAAACAAGTGGAAGCAACAGTAGATGTAAAGTTGAGGCAACGAGCTAAGGTTCATCATACTGCAACTCATTTACTACAAGCAGCGCTTAAAAAAGTCATTGGTCAGGAGACCTCTCAAGCTGGTTCTTTGGTTGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGTCCACTCCTTGATAGTGAGCTTGCAGAAATTGAACTGCTGATCAACGGATGGATTGAGGATGCGATTCTTCTTCAGACCAAAGTGATGCCTCTTGCTGATGCAAAAAGAGTAGGAGCAATTGCAATGTTTGGAGAAAAATATGGGGAAGAGGTACGTGTTGTAGAGGTTCCTGGAGTATCAATGGAACTTTGTGGTGGGACTCATGTCAGTAATACTTCTGAAATTCGTGGTTTTAAAGTAATTTCAGAGCAGGGTATTGCATCTGGTGTCAGGCGAATAGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATGTCAATGCCCGAGATTTGTATCTGAAACAGCTATGTTCCACTCTCAAAGTTAAACCTGAAGAAGTAACTGTGAGGATAGAAAACCTTTTAGAGGAGTTACGGGTAGCAAGAAATGAAAATTCAGCTGTGCGTGCAAAAGCAGCAGTCTACAAAGCTTCAGTTATTGCAAGCAAAGCGTTTTTGGTGGGGAATTCAAAACAGTACAGGATACTAGTTGAGCGCTTGGATGATGTTGATGCGGAGTCACTTAAAAGTGCTGCAGAATATTTAGTGGAAACACTAGCAGATCCAGCAGCTATTGTCCTGGGCTCATGTCCAGGTGAAGAGAAGGTTAGTCTAGTGGCTGCTTTTACTCCAGGGGTGGTTGGTCAGGGGATTCAGGCAGGTAAATTTATTGGACAGATAGCAAAATTATGTGGTGGCGGAGGAGGTGGAAGGCCCAATTTCGCTCAAGCTGGTGGGAGGAAGCCTGAAAATTTGGCTGGTGCCCTCGAGAAAGCTAAGTCAGAACTTATAGCTTATCTTTGTGAAAAAGGGAACTGA 2937 0.4331 MSMEGLAVPLPHLLPLLPLPKLAAIPTATSTSILNAAAGGGGFISLKQLGRHHSRRFLPLCTSSSLSHSQEIPVDDNCVSGDSIRERFLSFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKLPRQVPRATTSQRCIRTNDINNVGHTSRHHTFFEMLGNFSFGDYFKKQAIQWAWDLSTVEFGLPPERLWISVYQDDDETFQLWTQQVGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYADADLGDDTRFIEFYNLVFMQFNKKDDGSLEPLKQKNIDTGLGLERMARILQKAPNNYETDLILPIIEKASELANVSYGISDDQTKRYLKIVGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDHEGAFLPIIAEKVLELSTYIDADVKNRAPRILEELKREELRFVQTLERGEKLLEEKLADAISSAERNGTVPCLAGEDVFILYDTYGFPMEITKEVAEERGVSIDMNGFDIEMEKQRRQSQAAHNTVKLAIGSGTNIADSVPDTEFIGYEGLYCKAIVASLVVNGDPAVQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGENQPKAVVEIIDVQKSFGNIFVHKGIVQKGVVEVGKQVEATVDVKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDSELAEIELLINGWIEDAILLQTKVMPLADAKRVGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKVISEQGIASGVRRIEAVAGEAFIEYVNARDLYLKQLCSTLKVKPEEVTVRIENLLEELRVARNENSAVRAKAAVYKASVIASKAFLVGNSKQYRILVERLDDVDAESLKSAAEYLVETLADPAAIVLGSCPGEEKVSLVAAFTPGVVGQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLAGALEKAKSELIAYLCEKGN* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0203 978 SUPERFAMILY ThrRS/AlaRS common domain 644 803 IPR018163 GO:0000166
Mal2g0203 978 Gene3D Bira Bifunctional Protein; Domain 2 79 311 IPR045864 -
Mal2g0203 978 Hamap Probable alanine--tRNA ligase, chloroplastic. 69 975 IPR027522 GO:0009507
Mal2g0203 978 Gene3D - 792 853 - -
Mal2g0203 978 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 80 968 - -
Mal2g0203 978 SUPERFAMILY Class II aaRS and biotin synthetases 81 315 IPR045864 -
Mal2g0203 978 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 79 801 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Mal2g0203 978 Gene3D - 861 969 - -
Mal2g0203 978 Coils Coil 824 844 - -
Mal2g0203 978 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 745 788 IPR012947 GO:0004812|GO:0005524|GO:0043039
Mal2g0203 978 CDD AlaRS_core 82 310 - -
Mal2g0203 978 Hamap Alanine--tRNA ligase [alaS]. 80 973 IPR023033 GO:0004813
Mal2g0203 978 Pfam DHHA1 domain 825 967 IPR003156 GO:0003676
Mal2g0203 978 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 316 525 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Mal2g0203 978 Gene3D - 655 790 - -
Mal2g0203 978 SMART tRNA_SAD_4 745 788 IPR012947 GO:0004812|GO:0005524|GO:0043039
Mal2g0203 978 Gene3D - 716 769 - -
Mal2g0203 978 SUPERFAMILY Translation proteins 539 644 IPR009000 -
Mal2g0203 978 TIGRFAM alaS: alanine--tRNA ligase 84 952 IPR002318 GO:0000166|GO:0005737
Mal2g0203 978 PRINTS Alanyl-tRNA synthetase signature 296 309 IPR002318 GO:0000166|GO:0005737
Mal2g0203 978 PRINTS Alanyl-tRNA synthetase signature 269 280 IPR002318 GO:0000166|GO:0005737
Mal2g0203 978 PRINTS Alanyl-tRNA synthetase signature 147 158 IPR002318 GO:0000166|GO:0005737
Mal2g0203 978 PRINTS Alanyl-tRNA synthetase signature 347 363 IPR002318 GO:0000166|GO:0005737
Mal2g0203 978 PRINTS Alanyl-tRNA synthetase signature 371 384 IPR002318 GO:0000166|GO:0005737
Mal2g0203 978 Pfam tRNA synthetases class II (A) 84 646 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Mal2g0203 978 Gene3D - 530 644 - -
Mal2g0203 978 PANTHER ALANYL-TRNA SYNTHETASE 80 968 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0203 Mal-Chr2 2542667 2550264 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0203 K01872 - gmx:100817906 1581.62