Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5956 ATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAATCAGGAGGACAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTGGACAAGCGTATTTTGCGTAACCAAATCGGTGTTCTTAAAAAAGAGCTAGAATCTGTTAGGAAACACCGAAAGCAGTACCGTAATAGGCGTGTCTCAGTACCTGTGCCAGTGGTATCCTTGGTTGGTTATACGAATGCTGGTAAGAGTACACTTTTGAATCAATTAACTGGAGCAGATGTTCTTGCCGAGGATAAACTATTTGCAACTTTAGATCCAACTACAAGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGACACTGTTGGTTTTATTCAGAAGTTACCTACTACACTTGTTGCTGCCTTCAGAGCCACACTGGAGGAGATATCAGAGTCATCACTTTTGGTGCATGTGATTGATATCAGTCACCCCCTGGCCGAGCAACAGATAAATGCTGTGGACAAAGTTCTGTCAGAACTAGATGTAGCATCAATTCCAAGATTGATGGTCTGGAACAAGATTGATAGGGCTAGTGATCCCCAGAAAATCAGGCTAGAAGCTGGAAAAAGAGATGATGTTGTATGCATATCTGCCTTAAGTGGCGATGGCATACAAGAATTCTGTAATGCAGTTCAAGACAAACTAAAGGACTCCATGGTATGGGTGGAAGCTTTGTTACCATTTGAAAATGGGGACCTTCTCAGCACCATACACCAAGTTGGAATGGTTGAGAAAACTGAATATACCGAGCAAGGGACATATATCAAGGCTCATGTGCCCCTACGTTTTGCGAGATTGCTTACACCTATGAGGCAACTGTGTGTACCACGACCTTAA 885 0.4282 MEYQLPRLTKMWTHLERQSGGQVKGMGEKQIEVDKRILRNQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVIDISHPLAEQQINAVDKVLSELDVASIPRLMVWNKIDRASDPQKIRLEAGKRDDVVCISALSGDGIQEFCNAVQDKLKDSMVWVEALLPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARLLTPMRQLCVPRP* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5956 294 TIGRFAM GTP_HflX: GTP-binding protein HflX 2 230 IPR016496 GO:0005525
Mal1g5956 294 PRINTS GTP1/OBG GTP-binding protein family signature 71 91 IPR006073 GO:0005525
Mal1g5956 294 PRINTS GTP1/OBG GTP-binding protein family signature 138 156 IPR006073 GO:0005525
Mal1g5956 294 CDD HflX 28 231 IPR030394 GO:0005525
Mal1g5956 294 Pfam HflX C-terminal domain 201 269 IPR045498 -
Mal1g5956 294 Gene3D - 68 236 IPR027417 -
Mal1g5956 294 PANTHER GTP-BINDING PROTEIN 6-RELATED 1 279 - -
Mal1g5956 294 TIGRFAM small_GTP: small GTP-binding protein domain 70 226 IPR005225 GO:0005525
Mal1g5956 294 Gene3D - 1 54 - -
Mal1g5956 294 Pfam GTP-binding GTPase Middle Region 1 63 IPR032305 -
Mal1g5956 294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 242 IPR027417 -
Mal1g5956 294 PANTHER GTP-BINDING PROTEIN HFLX 1 279 IPR016496 GO:0005525
Mal1g5956 294 Pfam 50S ribosome-binding GTPase 71 189 IPR006073 GO:0005525
Mal1g5956 294 Coils Coil 42 62 - -
Mal1g5956 294 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 69 235 IPR030394 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5956 Mal-Chr1 137380692 137383607 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5956 K03665 - gmx:100803039 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5956 1 137380692 137383607 Mal1g5956 1 137380692 137383607 ECH