Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5557 ATGTCTAACATCTTCGATGAGCTCAAGTTCATACTCCTCAAGTATTTTGATGAAGAAGGTTTAAAGGAAACTGCACGCACATTTGAGCGTGAAAGTGGGGTGTACTTCAACTTAAAGTATTTTGAGGATTTGGTACTTAATGGCAAGTGGGATGAGGTTGAAAAGTATCTGTCTGGATTCACAAAAGTTGAAGAGAATAATCATTCAATCAAAATATACTTTGAATTAAGAAAACAAAAATATTTGGAGGCTTTGGACAGCAACAATCGTAGCGAGGCTTTCGATATTCTTATGAAGGATCTGAAAGTCTTCGGCCCAAGGAATGAGGAAGTATTTAAAGAGTTGACTCAATTATTGACAATTAACAATATAAGGGAACATAAATCACTTTCAACATATCAAGATGCAATTTGGGCAAGAAAGAAGGTGATGGATGAAATAAAGGAAATCATAGAGAAACATCCTATGCTGGATGGGAAACTGAAATTTCCTGATTTTCAAAGTCAGAGGCTAAAGCATCTTCTGAATGAAAGTTTAAATTGGCAGCATCAAAATAATGCTTCAGCTGCTCCAGAGCATGGCCTCTTGATGAATCATGTCAATCATACTATACCATCTACTTTTGCTGCAATAAATCAAGGAACGGCTTTGAATAATTTTGGGATTTCTAATGAGAGTGGCAAAATTTTGGAGAACCTGAAGCCTGATTTAATTGAAAAATCCATCAAATTATCGAAGAGTGTATTTCATATTTGTACACCATCTCAATGCCAAATGTTGCTACTCCCTAAACATTCCCAAGAAAACAAGATTGTTAGACTCGCTTACAAAAATGTGGGAAATGGAATTTTGGCATTGACATCAAATGGCAATCATATACTTTGGTCATGGACACATACTAGCACTGATTTGGATGCCAAGGCAACAACGCAAGTTTGCCCTCAATTGTGGCATCCAAAAAGTGGTTTGGAATTTATGAGCAATGACCTTACAAATGCCAATGGTGAAGATTTAGTTTCTTGTTTTGCTATATCAAAAACGGATTCATTTCTCATATCAACCTCAGGAGGGGAGGTTTCTTTGTTCAATATGGTAACATTTAAGAGTATAGTAACTATCTTTCCACCTCCACCAATGGTAACATGTCTTGCCTTCTATCCTAAAGATAACAATATATTTGTTGTTGGCTTGGATGACTCCAGCATAGTTATATACAAAATTCACAACCATGAACAGGTTCAAAAGCTTGAGGGTCATTCTAAACGAGTTACTGCTCTTGCATTCTCAAATACTTTGAATGTTCTTGTTTCTGCAGATGCAAATGCTCAGATTATTGTATGGGATAGCAATAGCTGGGAAAAATTGAGAGATAGAAACTTGCAAATACATGGACCAAATGTGCCACAAATATTATCTGAAACTCAAATTCAATTTCACCCTGATCAACAAAAATTTCTTGTTGCACATAATATTCATCTTGCAATTTATGAAGCAACAGAACTAAAATGTGTCAACCAGTGGGACCCAAATTTTTCAACAGCTATCTCCCAAGCAACATTCTCATCTAATGGTGAAATGGTGTATGCTTGTTTTCTTGATGGGACTTTGGCAATATTTGACTCATCAAATTTTCAAATGCATTATAACATTCATCCCTCTGTTTACCTTTCATCAATTTCCAGTGTGAAAATCTACCCAACTGCTATAGCTGCACATCCACATAAACCAAACCAATTTGCTGTGGGGTGCACAGATGGTAGTGTTTATGTGTTTGAGCCAAAGGAAGCATGTGGTAATTGGATCATGTCTCAAGTTGATAAGGAAAATGATGCTAACAGCAAAGGGAGTCAAGGTTGA 1857 0.363 MSNIFDELKFILLKYFDEEGLKETARTFERESGVYFNLKYFEDLVLNGKWDEVEKYLSGFTKVEENNHSIKIYFELRKQKYLEALDSNNRSEAFDILMKDLKVFGPRNEEVFKELTQLLTINNIREHKSLSTYQDAIWARKKVMDEIKEIIEKHPMLDGKLKFPDFQSQRLKHLLNESLNWQHQNNASAAPEHGLLMNHVNHTIPSTFAAINQGTALNNFGISNESGKILENLKPDLIEKSIKLSKSVFHICTPSQCQMLLLPKHSQENKIVRLAYKNVGNGILALTSNGNHILWSWTHTSTDLDAKATTQVCPQLWHPKSGLEFMSNDLTNANGEDLVSCFAISKTDSFLISTSGGEVSLFNMVTFKSIVTIFPPPPMVTCLAFYPKDNNIFVVGLDDSSIVIYKIHNHEQVQKLEGHSKRVTALAFSNTLNVLVSADANAQIIVWDSNSWEKLRDRNLQIHGPNVPQILSETQIQFHPDQQKFLVAHNIHLAIYEATELKCVNQWDPNFSTAISQATFSSNGEMVYACFLDGTLAIFDSSNFQMHYNIHPSVYLSSISSVKIYPTAIAAHPHKPNQFAVGCTDGSVYVFEPKEACGNWIMSQVDKENDANSKGSQG* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5557 618 Gene3D - 493 613 IPR015943 GO:0005515
Mal1g5557 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 457 IPR001680 GO:0005515
Mal1g5557 618 ProSiteProfiles LIS1 homology (LisH) motif profile. 7 36 IPR006594 GO:0005515
Mal1g5557 618 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Mal1g5557 618 Pfam WD domain, G-beta repeat 412 448 IPR001680 GO:0005515
Mal1g5557 618 Gene3D - 245 490 IPR015943 GO:0005515
Mal1g5557 618 SMART WD40_4 366 406 IPR001680 GO:0005515
Mal1g5557 618 SMART WD40_4 326 363 IPR001680 GO:0005515
Mal1g5557 618 SMART WD40_4 500 540 IPR001680 GO:0005515
Mal1g5557 618 SMART WD40_4 552 592 IPR001680 GO:0005515
Mal1g5557 618 SMART WD40_4 409 448 IPR001680 GO:0005515
Mal1g5557 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 448 - -
Mal1g5557 618 PANTHER TOPLESS-LIKE PROTEIN 1 618 - -
Mal1g5557 618 SUPERFAMILY WD40 repeat-like 331 593 IPR036322 GO:0005515
Mal1g5557 618 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 618 IPR027728 GO:0006355
Mal1g5557 618 SMART ctlh 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5557 Mal-Chr1 130987079 130995477 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5557 - - mtr:MTR_1g012820 974.926