Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g5513 | ATGATAAAATCCAAGTTACTATCAACAACCATAAACCTCCAAGTCCAACTTCCCCCAAACACCCCAAAAACAAGATTAACAGAACAAATCATCATAACCCTCCTTAACTCCCACTGCAACACATTCCCTAAACTAACACAAATCCACGCTTTCATCCTCAAAACCGGCCTCCAAAACAACCCATTAGTCCTCACAAAATTCACTTCAACTTCCTCCAACCTCAACTCCATCCACTACGCCACCTCTTTTTTATTCCCACCTCCCCAAACTACTCCTACACCCACCCCCTCCTACGATGCATTCCTCTTCAACACTGTCATTTGCTCTTACTCCCAAACACGCGACTCAAAATCAAATTCCTTGGTGTTTTACAGAACAATGCTACGTTACGGTGTTTCGCCGAATAAATTCACGTTTCCGTTTGTTCTTAAAGCGTGTGCGGGGATTGGGAGTTTGAGATTGGGGAAATGTGTTCATGGGTGTGTTGTGAAGTTTGGATTTGAGGAGGATGTTCATGTGTTGAATACGCTGATTCATATGTATTGTTGTGGGGGAGAAGATGGGTTTCAGTTTGCGGAGAAGGTGTTTGATGATAGTCCTAAGATGGATACGGTTACTTGGAGTGCTATGATTGGTGGGTTTGTAAGATTGGGATGGTGTGCACGTGCTGTTGGGTTGTTTAGGGAAATGCAGGTTATGGGTGTTTGCCCTGATGAGATCACGATGGTTTCAGTTTTGTCTGCATGTGCTGATTTGGGGGCGCTTGAGCTTGGAAAATGGGTGGAATCGTACATTGAGAAGAAAAACATCCCAAAATCTATGGAACTCTGTAATGCACTGATAGACATGTTTGCAAAGTGCGGCAATGTCGACAAAGCAATCAAACTGTTCAGACAAATGGACTCACGCACCATAGTTTCATGGACTTCAGTAATAGCTGGTCTCGCGATGCACGGTCGTGGTGTAGATGCTGTTTCTTTATTCGATGAAATGGTTGAAAATGGGATAACACCTGATGATGTTGCTTTCGTCGGGGTGCTCTCTGCTTGCAGTCACTCAGGACTTGTTGATAAAGGAAGATACTATTTCAATTCAATGGAAAGGAATTTCAGTATTGTGCCGAAGGTAGAACACTATGGATGCATGGTGGATTTGCTTTGTAGAGGTGGACTTGTTAAAGAGGCATTTGAGTTTGTTCAAAAGATGCCTTTTGAACCAAACCAAATCATATGGAGAACCATAATCACTGCTTGTCATGCAAGTGGTGAACTCAAGCTTGGAGAGAGTATATCCAAAGAGCTAATAAAAAGTGAGCCGATGCATGAGTCTAATTATGTTTTGCTGTCGAACATTTACGCGAAATTGCGACAATGGGAGAAGAAGACTAAGGTGAGAGAGATGATGGATATGAGAGGGATGAAGAAGATTCCGGGGAGTACCATGATTGAGGTAAACAATGAAATGCATGAGTTTGTTGCTGGTGATAAGTCTCATGATCAGTATAAGGAGATATATGAAATGGTGGATGAGATGGGTAGGGAAATCAAAAGGGCAGGGTATGTGCCCACAACATCTCAAGTGTTGCTTGACATTGATGAAGAAGATAAAGAAGATGCTTTGTATAGACATAGTGAAAAGCTTGCCATAGCTTTTGCTCTTTTGAACACTCCGCCTAGGACTTCCATTAGGATTGTGAAGAACTTGCGTGTTTGTGAAGATTGTCACTCTGCTACTAAGTTTATATCTAAGGTTTATAATCGAGAGATTGTCGTCAGGGACCGCAATCGATTCCACCATTTCAAGAATGGTTTGTGCTCTTGTAAAGACTTTTGGTAA | 1836 | 0.4221 | MIKSKLLSTTINLQVQLPPNTPKTRLTEQIIITLLNSHCNTFPKLTQIHAFILKTGLQNNPLVLTKFTSTSSNLNSIHYATSFLFPPPQTTPTPTPSYDAFLFNTVICSYSQTRDSKSNSLVFYRTMLRYGVSPNKFTFPFVLKACAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCGGEDGFQFAEKVFDDSPKMDTVTWSAMIGGFVRLGWCARAVGLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYIEKKNIPKSMELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGVDAVSLFDEMVENGITPDDVAFVGVLSACSHSGLVDKGRYYFNSMERNFSIVPKVEHYGCMVDLLCRGGLVKEAFEFVQKMPFEPNQIIWRTIITACHASGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKIPGSTMIEVNNEMHEFVAGDKSHDQYKEIYEMVDEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPRTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCKDFW* | 612 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g5513 | 611 | TIGRFAM | PPR: pentatricopeptide repeat domain | 306 | 339 | IPR002885 | - | |
| Mal1g5513 | 611 | TIGRFAM | PPR: pentatricopeptide repeat domain | 276 | 303 | IPR002885 | - | |
| Mal1g5513 | 611 | TIGRFAM | PPR: pentatricopeptide repeat domain | 205 | 239 | IPR002885 | - | |
| Mal1g5513 | 611 | TIGRFAM | PPR: pentatricopeptide repeat domain | 343 | 374 | IPR002885 | - | |
| Mal1g5513 | 611 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 99 | 134 | IPR002885 | - | |
| Mal1g5513 | 611 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 203 | 237 | IPR002885 | - | |
| Mal1g5513 | 611 | Pfam | PPR repeat | 277 | 303 | IPR002885 | - | |
| Mal1g5513 | 611 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 273 | 303 | IPR002885 | - | |
| Mal1g5513 | 611 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 304 | 338 | IPR002885 | - | |
| Mal1g5513 | 611 | PANTHER | - | 30 | 597 | - | - | |
| Mal1g5513 | 611 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 30 | 597 | - | - | |
| Mal1g5513 | 611 | Pfam | PPR repeat | 372 | 402 | IPR002885 | - | |
| Mal1g5513 | 611 | Pfam | DYW family of nucleic acid deaminases | 519 | 611 | IPR032867 | GO:0008270 | |
| Mal1g5513 | 611 | Pfam | E motif | 423 | 483 | IPR046848 | - | |
| Mal1g5513 | 611 | Pfam | PPR repeat family | 304 | 351 | IPR002885 | - | |
| Mal1g5513 | 611 | Pfam | PPR repeat family | 203 | 250 | IPR002885 | - | |
| Mal1g5513 | 611 | Gene3D | Tetratricopeptide repeat domain | 277 | 514 | IPR011990 | GO:0005515 | |
| Mal1g5513 | 611 | Gene3D | Tetratricopeptide repeat domain | 97 | 275 | IPR011990 | GO:0005515 | |
| Mal1g5513 | 611 | Pfam | E+ motif | 489 | 515 | IPR046849 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g5513 | Mal-Chr1 | 130160112 | 130163049 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal1g5513 | 103 | 611 | Glycoside Hydrolase | AT3G49170 | 39.300 | 1.01e-131 | 405 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g5513 | - | - | lang:109350726 | 949.888 |