Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5500 ATGCGACGCACTCCGTCTATCCATTTCCTCGCCGCCACCGACGCCGCCTTCTCCACCGCCACAATGTCTTCACGCCATTACCACCGAGGTCACCGGAGAGGAAACTCCGGCCGTTCGTATTCCGGCGGTAGAAACCAGTTCATTACCGGAGACGATCACTTACAATCAGTCCGCGACGCTAATTCGACAATCCGGCGAGGTGAGAATGAAAACTCTCCGAATCAAACGCAGTATCATCAGAATCCACCTTACGATCTTCATCGTCATCCTCCTCCGCCGTTTTACTATCAGAATCCACCTTACAATCCTCGTCCTCATCCACCGCCTCAATATCAGAATCCATCTTACAATCCAAGGCCTCATCCGTATCCTCATCCACCTGTGCGTTTTCGGCCGCCGTATGATAACCGACGTGAATTTCGTCCAAAACAGAATGTTTATGCAAAGCCTGCGGATTATCGAGAGTGGGAGGATGCTTTGACGCCGCCACCTCGGAATTGTGAAAGGTTTAAAGTCCTTTCCTATAATATATTGGCTGACTACCTTGCTATGGACCACTGGAGAAAACTTTATTATCACATACCTTCTTACATGTTGAACTGGCAGTGGAGAAAGAGTAAAATTATTTTGGAGCTTGGCTTGTGGTCTGCCGATATCATGTGTTTTCAGGAGGTTGATAAATTTGATGAGTTGGCGGAGGATTTGAAGTTTAAGGGATACAAAGGCATCTGGAAGATGCGCACAGGCAATCCAGTTGATGGTTGTGCAATTTTTTGGCGAACATCAAGGTTCAATTTGTTATACGAAGAATGCATTGAGTACAATAAGTTGGGACTCAGAGACAATGTTGCTCAAATATGTGTGCTAGAGCTCATTAATCAAAATGGATCTCTCCCGCCCAGCTCGACAGGTTCTCGTAAAGTTGTGGTTTGCAACATTCATGTGCTTTACAATCCGAATAGAGGAGAAATTAAGCTTGGCCAGGTCAGAGTCCTACTGGACAAGGCTCAAGCTGTTTCTCAACTTTGGAATAATGCCCCTGTTATTATCTGCGGGGATTTTAATTGTACCCCTAAGAGTCCATTGTACAACTTTATCACAGAACAAAAGTTAGATTTGTCTGGAATAGATAGGAATAGAGTATCAGGGCAAGCTTCTGCTGTAATTCGAGCACCATGGACCTATGGTCCTAAATCTAGTGAAAGAAGATCAGCTAATGTTTCAAATCAGGCCATATCCGCTGAAGGTGGCAAGGAAGTTACTATTGAACAAAATAGTTCTTTGTCAGACATGCAGAATCCGGTCACCGAGAGTAACAGTTTAGATAATCAAAATACTCTCCCTGTTATGGATATGTCTGATAAGACAGATGTGCAGTGTAGCAGGGAGACTGATATATGTGCAGGAGAAGATACTTGGGAGGCTGTTGACCATAATAAGATTTTTGGTGAAGTTGATGGCATGAAAGAGGTGCCAAATCCTTCTTATAATAAAGGTATAAATGATGATCAAATTCATGACGTCACACCTATAACATCTTCAACTCTAGAGACAGTTCACACTGACCCAACTGGGATGGGAAGCACAGAACGTATATCAGATGTTACTTTAACTACAAATCAAGAATCATTAAGTGAAAAGTCCAACTTGCATGACCATAAAGGGACTAAGCATATGGAGTCTGACTGTTCCCCAGCCTCTCTTGAAGAAGGTGATCAAGCTTCAAAGGTGAAGATAGATATTGAGTCAACAGATCTTCTTAACCTACAAGTATCTTCAGATAAACCATCCAGCAAGACTTCAGTTTCTGATGATTTTGAAGCCCCTCATCCAGGGTATAGAGAAAACTCATCTTATGAGGTCATTGCTAATGACCAAATGAATTGCTCATCAACCACATATCTAGTTAGCGAATCACAAAAACCTACCAACTTTGACTTTACACTAAATGAAAAACTAGAGAAATTTTGCTTTGATGAGATAGATAAAGCCGATATAAGCAGTGGGAATATTGGTGAAGATGCCGTCGATTTCATAAATGCCTTACATACTGCCGGAGAAGGAAGCAATGAAGCAGAGAGAACTACTTATAATCCATCATTATGGACCCCTGCTGAGATAGAAACTGCAACAGGAAATGCAGAGTGCACGTTCTTGGAGCACCCTTTATCACTTAGGAGCACATACACGGAAGTTATGGACACTTCAGGGACTAGAGACCCCAATGGCGAGCCCTTGGTAACTAGTTACAACAAGTGCTTCTTGGGCACTGTTGACTACATTTGGCGATCTGAAGGTCTGCAAACAACCAGAGTTCTTGCTCCAATACCTAAACGTGTCATGGAAAGCACTCAAGGATATCCAACAAAGAAATGGGGTAGCGATCATATTGCATTGGTTTCAGAGCTGGTTTTCTTGGAAGATGGTACTGCCATCAGCAAGAATGTTGTATAG 2454 0.4291 MRRTPSIHFLAATDAAFSTATMSSRHYHRGHRRGNSGRSYSGGRNQFITGDDHLQSVRDANSTIRRGENENSPNQTQYHQNPPYDLHRHPPPPFYYQNPPYNPRPHPPPQYQNPSYNPRPHPYPHPPVRFRPPYDNRREFRPKQNVYAKPADYREWEDALTPPPRNCERFKVLSYNILADYLAMDHWRKLYYHIPSYMLNWQWRKSKIILELGLWSADIMCFQEVDKFDELAEDLKFKGYKGIWKMRTGNPVDGCAIFWRTSRFNLLYEECIEYNKLGLRDNVAQICVLELINQNGSLPPSSTGSRKVVVCNIHVLYNPNRGEIKLGQVRVLLDKAQAVSQLWNNAPVIICGDFNCTPKSPLYNFITEQKLDLSGIDRNRVSGQASAVIRAPWTYGPKSSERRSANVSNQAISAEGGKEVTIEQNSSLSDMQNPVTESNSLDNQNTLPVMDMSDKTDVQCSRETDICAGEDTWEAVDHNKIFGEVDGMKEVPNPSYNKGINDDQIHDVTPITSSTLETVHTDPTGMGSTERISDVTLTTNQESLSEKSNLHDHKGTKHMESDCSPASLEEGDQASKVKIDIESTDLLNLQVSSDKPSSKTSVSDDFEAPHPGYRENSSYEVIANDQMNCSSTTYLVSESQKPTNFDFTLNEKLEKFCFDEIDKADISSGNIGEDAVDFINALHTAGEGSNEAERTTYNPSLWTPAEIETATGNAECTFLEHPLSLRSTYTEVMDTSGTRDPNGEPLVTSYNKCFLGTVDYIWRSEGLQTTRVLAPIPKRVMESTQGYPTKKWGSDHIALVSELVFLEDGTAISKNVV* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5500 817 SUPERFAMILY DNase I-like 160 372 IPR036691 -
Mal1g5500 817 MobiDBLite consensus disorder prediction 38 82 - -
Mal1g5500 817 MobiDBLite consensus disorder prediction 410 449 - -
Mal1g5500 817 MobiDBLite consensus disorder prediction 546 565 - -
Mal1g5500 817 MobiDBLite consensus disorder prediction 85 129 - -
Mal1g5500 817 Gene3D Endonuclease/exonuclease/phosphatase 143 444 IPR036691 -
Mal1g5500 817 Gene3D Endonuclease/exonuclease/phosphatase 614 814 IPR036691 -
Mal1g5500 817 MobiDBLite consensus disorder prediction 590 614 - -
Mal1g5500 817 MobiDBLite consensus disorder prediction 590 604 - -
Mal1g5500 817 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 33 806 - -
Mal1g5500 817 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 33 806 - -
Mal1g5500 817 Pfam Endonuclease/Exonuclease/phosphatase family 173 374 IPR005135 GO:0003824
Mal1g5500 817 MobiDBLite consensus disorder prediction 20 129 - -
Mal1g5500 817 MobiDBLite consensus disorder prediction 538 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5500 Mal-Chr1 129998066 130013184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5500 201 369 EF-hand Containing Proteins AT5G54130 26.230 1.36e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5500 - - gmx:100810446 890.182