Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g5479 | ATGCATTCTCAGAATCCCTATCGTATACTATTCTCCCTCCGTTTATTCCTATCTACACCCCTCAAACCAAACCCTATTCCTTTCTACCGTCTCTCTTCCTCATCCTCTTCATGGCTCTCCCAACCCGGAAACCCACTCATCAACTGGCCCTCCCTCCCCCCAACTCAACCCAAACCCGGTCCAACCCCAACCCAAATCCCAAATTCAAAAACCGACTCTCCCACTTTCTCCTCAAACGATTTCACCCTCATTTCAACTATCTTCACCAACCCATCCATCTCACCCGGTCCATCTCTCCACACCGAACTAACCCTCACCGGAATCAAACCAACCTCCTCTCTCCTCCGCGCCGTCTTCGACCACTTTGCTTCCTCGCCGAAGCTACTTCACTCGCTGTATCTCTGGGCTGAGAATCAACCCGGGTTTAAACCCGACTCGGCTCTGTTTGACTCCGTCATCAACGCTCTTGCGAAAATGAGGGAGTTTGATGATGCCTGGAAACTTGTTCTTGATCGCGTTGATAGAGAAGGTGATGATGATGAGAAGTTGGTTTCTGTTGGTACTTTTGCTATCTTGATTCGACGATATTCCAGAGCAGGTATGCACAAGGCTGCTATTAGGACGTTTGAGTTTGCAAAAGATAAGAAGTCAATTGTGGATTCGGGGTCTGAAATGAGTTTATTTGGGATATTGATTGATTCACTTTGCAAAGAAGGGTCTGTAAGGGAAGCTTCTGAGTATTTCCTTACAAGAAAGGAGATAGACCCATGTTGGGTTCCTTCAATTCGGGTTTATAACATAATGTTAAATGGATGGTTTCGAGCGAGGAAACTCAAACACGCTGAGAGGCTTTGGGAAGAGATGAAGAAGGAGAATGTGAGACCTACTGTTGTGACATACGGTACCCTTGTGGAAGGATACTGTCGGATGCGCCATGTTGAAAAGGCGCTTGAGATGGTTGGTGAAATGACCAAAGAGGGAATTCAACCAAATGCTATTGTGTATAACCCCATAATTGATGCATTGGCAGAAGCTGGGAGATTTAAAGAGGCTTTGGGTATGATGGAGCGTTTTCATGTTTTGCAAATAGGTCCTACTCTTTCAACTTACAATTCTCTGGTGAAGGGTTTTTGTAAGGCAGGAGATCTTGAAGGTGCTAGTAAAATTCTTAAAAAGATGATAAGTAGAGGTTTTCTTCCAATCCCCACTACCTATAATTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAGTTGATGAAGGGATGAACCTGTATACCAAGATGCTTGAATCTGGTCATAACCCGGATCGTCTAACGTACCATCTTGTGTTGAAGATGTTATGTGAAGAGGAGAAATTAGAGTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCATAAAGGGTATGGCATGGACTTAGCTACGAGTACCATGTTAACTCATTTGTTATGCAAAATGCATAAGTTGGAAGAGGCTTTTGCAGAGTTTGAGGACATGATAAGAAGAGGTATAATTCCTCAATATCTTACATTTCAAAAATTGAATGTTGAGTTAAAGAAACAAGGCATGACTGCAATGGCTCGAAAGCTTTGCCACTTGATGTCGTCTGTTCCCCATTCTACGAACTTGCCAAATACATATGGTGAAGTCAGAGAAGAAGCACATGAACGTAGGAAATCTATAATTCAGAAAGCCAAAGCAGTTTCTGATTTGCTGAAGGACCCCAAAGAACTTGACAAGATTCGAAGTTCATCAGAAAATGATGTCTCAGGTGCAAACTGTTTGATAGAGGATATTGAGAAAAATACAGGTATAAGATAA | 1818 | 0.4274 | MHSQNPYRILFSLRLFLSTPLKPNPIPFYRLSSSSSSWLSQPGNPLINWPSLPPTQPKPGPTPTQIPNSKTDSPTFSSNDFTLISTIFTNPSISPGPSLHTELTLTGIKPTSSLLRAVFDHFASSPKLLHSLYLWAENQPGFKPDSALFDSVINALAKMREFDDAWKLVLDRVDREGDDDEKLVSVGTFAILIRRYSRAGMHKAAIRTFEFAKDKKSIVDSGSEMSLFGILIDSLCKEGSVREASEYFLTRKEIDPCWVPSIRVYNIMLNGWFRARKLKHAERLWEEMKKENVRPTVVTYGTLVEGYCRMRHVEKALEMVGEMTKEGIQPNAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDLEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMLESGHNPDRLTYHLVLKMLCEEEKLELAVQVSKEMRHKGYGMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKLNVELKKQGMTAMARKLCHLMSSVPHSTNLPNTYGEVREEAHERRKSIIQKAKAVSDLLKDPKELDKIRSSSENDVSGANCLIEDIEKNTGIR* | 606 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g5479 | 605 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 366 | 400 | IPR002885 | - | |
| Mal1g5479 | 605 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 92 | 601 | - | - | |
| Mal1g5479 | 605 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 296 | 330 | IPR002885 | - | |
| Mal1g5479 | 605 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 471 | 505 | IPR002885 | - | |
| Mal1g5479 | 605 | PANTHER | LEAF PROTEIN-LIKE | 92 | 601 | - | - | |
| Mal1g5479 | 605 | MobiDBLite | consensus disorder prediction | 49 | 64 | - | - | |
| Mal1g5479 | 605 | SUPERFAMILY | HCP-like | 236 | 443 | - | - | |
| Mal1g5479 | 605 | Gene3D | Tetratricopeptide repeat domain | 323 | 392 | IPR011990 | GO:0005515 | |
| Mal1g5479 | 605 | Gene3D | Tetratricopeptide repeat domain | 112 | 251 | IPR011990 | GO:0005515 | |
| Mal1g5479 | 605 | Gene3D | Tetratricopeptide repeat domain | 252 | 322 | IPR011990 | GO:0005515 | |
| Mal1g5479 | 605 | Pfam | PPR repeat family | 404 | 448 | IPR002885 | - | |
| Mal1g5479 | 605 | Pfam | PPR repeat family | 260 | 309 | IPR002885 | - | |
| Mal1g5479 | 605 | MobiDBLite | consensus disorder prediction | 49 | 72 | - | - | |
| Mal1g5479 | 605 | Gene3D | Tetratricopeptide repeat domain | 393 | 576 | IPR011990 | GO:0005515 | |
| Mal1g5479 | 605 | TIGRFAM | PPR: pentatricopeptide repeat domain | 369 | 400 | IPR002885 | - | |
| Mal1g5479 | 605 | TIGRFAM | PPR: pentatricopeptide repeat domain | 264 | 296 | IPR002885 | - | |
| Mal1g5479 | 605 | TIGRFAM | PPR: pentatricopeptide repeat domain | 298 | 332 | IPR002885 | - | |
| Mal1g5479 | 605 | TIGRFAM | PPR: pentatricopeptide repeat domain | 404 | 436 | IPR002885 | - | |
| Mal1g5479 | 605 | TIGRFAM | PPR: pentatricopeptide repeat domain | 333 | 360 | IPR002885 | - | |
| Mal1g5479 | 605 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 436 | 470 | IPR002885 | - | |
| Mal1g5479 | 605 | Pfam | PPR repeat | 365 | 393 | IPR002885 | - | |
| Mal1g5479 | 605 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 401 | 435 | IPR002885 | - | |
| Mal1g5479 | 605 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 261 | 295 | IPR002885 | - | |
| Mal1g5479 | 605 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 331 | 365 | IPR002885 | - | |
| Mal1g5479 | 605 | Pfam | PPR repeat | 228 | 248 | IPR002885 | - | |
| Mal1g5479 | 605 | Pfam | PPR repeat | 476 | 503 | IPR002885 | - | |
| Mal1g5479 | 605 | Pfam | PPR repeat | 334 | 357 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g5479 | Mal-Chr1 | 129664001 | 129667322 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal1g5479 | 253 | 542 | Glycosyltransferase | AT1G05670 | 25.172 | 1.65e-23 | 103 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g5479 | - | - | gmx:100793484 | 841.647 |