Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5393 ATGCTTCTAACTCACGCTTTCTCCTCATACATTCTCATTTCTTGTTCTTCTTCTTCTCCAATACGACGTCGTTTAGTTACCACTCCTCGCCAAACAAATCTCAAGCGCCTCACTTCACGCATAGTTCAACTCACTCACCGAAAACAGCTTCATCAAATTCTCAATGAAATCGAAGTTGCCAAGAAACGTTTTGGAAAGCTGAATACGATTGTCATGAATGCGGTTATGGAAGCTTGTGTTCGTTGCGGTGATATCGATTCAGCTCTCAAGATTTTCGATGAGATGAAAAATCCTCAAGCTTGTGGTGTTGATACTGTCACCTATGCTACTCTTTTGAAGGGTTTAGGCAAGGCACGGAGATTTGATGAAGCTTTTCGATTGCTTGAATCTGTCGAAAATGGTACTGCCGTGGGAAGTCCAAAGTTGTCGGCACCATTGGTCTTCGGTTTGCTAAATGCCTTGGCAGAAGCAGGAGACTTGCATCGTGCAAATGGCCTCCTTGCTTGTTATGGTTCTGTGCTTCATGAAGGAGAACATTTTTCAATCTCAGTATACAACCTTCTAATAAAGGGGCATATAAACTCAGGCTGTCCTCACACTGCAATAAACATGCTCAGTGAAATTTTACATCAAGGAATAATGCCTGACAGGCTAACGTATAACACACTAATTTTAGCTTGTGTTCAGAGTGAAAAGTTGGATGTTGCCATGCAATTGTTTGTGGAAATGAAGGAAAAAGCGCAGGAATTCATCCATGATGATCTGTTTCCAGATATCGTTACATACACAACATTGCTCAAGGGTTTTGGGCAGACAAAGGATCTTGTTTCAGTTGTGCAAATAGTACTGGAAATGAAATCATGTTCTGAGTTATACATTGATAGAACTGCTTACACTGCAATAGTTGATGCTTTACTAAAATGTGGCTCAGTTAAGGGTGCTCTGTGTATTTTTGGAGAAATACAGAAGCAGGTTGGTTGGAATCCAGAGTTGAGACCAAAACCTCATCTCTATCTTTCCATGATGCGTGCCTTTGCTGTTCGAGGAGATTATGATCTGGTTAAAAATTTGCATAGGCGGATTTTGCCAGATACGGCAGGAACCATCTTACCAGTTTCCCAAGAAGAAGCCGACCACCTTCTAATGGAAGCAGCCCTGAACGCTGGCAAGGTTGATGTCGCTATTAAAAATCTTACATATATTGTTTCAAGATGGAAGGGCATATCTTGGACAAGTCATGGAGGCATGGTTGCTTCTCGTATTGAGGCCTTATTGGGATTCTCAGCATCTGTATTCAATCCTTTCTTACTTCCTCAGGTTTCACCTTCTGAACCGATTGAGGGTTTCATGAAACCATTCGAAGCAACACGGCCACTGCAAGGTACCATAAAGCTGAAGGATGTGGTATCACGTTTCTTTAATGATGCAGTTGTTCCTATTGTAGATGAGTGGGGCAGTTGTACAGGGCTGTTGCACCGCGAAGATTGCAATCAGTTGGATGCTCCACTTTCAACAATGATGAGAAGCCCTCCTCCCAGTGTTACGGCTTCAACATCTGTTGGCCATAAGCGTTACCCAATGGTTATCATTGTAAATTGCACCGACTCGTATGCTACTTCATACGGTTGTAGAGCAGTTGGAGTTTTTACATTAGAACAATTGAATAGGCTTATCAAACCTGTATCTGAATTGAAAGAGACAGACCTTTCACTCTGTAGAATATAG 1725 0.4197 MLLTHAFSSYILISCSSSSPIRRRLVTTPRQTNLKRLTSRIVQLTHRKQLHQILNEIEVAKKRFGKLNTIVMNAVMEACVRCGDIDSALKIFDEMKNPQACGVDTVTYATLLKGLGKARRFDEAFRLLESVENGTAVGSPKLSAPLVFGLLNALAEAGDLHRANGLLACYGSVLHEGEHFSISVYNLLIKGHINSGCPHTAINMLSEILHQGIMPDRLTYNTLILACVQSEKLDVAMQLFVEMKEKAQEFIHDDLFPDIVTYTTLLKGFGQTKDLVSVVQIVLEMKSCSELYIDRTAYTAIVDALLKCGSVKGALCIFGEIQKQVGWNPELRPKPHLYLSMMRAFAVRGDYDLVKNLHRRILPDTAGTILPVSQEEADHLLMEAALNAGKVDVAIKNLTYIVSRWKGISWTSHGGMVASRIEALLGFSASVFNPFLLPQVSPSEPIEGFMKPFEATRPLQGTIKLKDVVSRFFNDAVVPIVDEWGSCTGLLHREDCNQLDAPLSTMMRSPPPSVTASTSVGHKRYPMVIIVNCTDSYATSYGCRAVGVFTLEQLNRLIKPVSELKETDLSLCRI* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5393 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Mal1g5393 574 TIGRFAM PPR: pentatricopeptide repeat domain 219 246 IPR002885 -
Mal1g5393 574 TIGRFAM PPR: pentatricopeptide repeat domain 260 288 IPR002885 -
Mal1g5393 574 TIGRFAM PPR: pentatricopeptide repeat domain 72 96 IPR002885 -
Mal1g5393 574 TIGRFAM PPR: pentatricopeptide repeat domain 184 216 IPR002885 -
Mal1g5393 574 TIGRFAM PPR: pentatricopeptide repeat domain 106 130 IPR002885 -
Mal1g5393 574 Pfam PPR repeat family 68 116 IPR002885 -
Mal1g5393 574 Pfam PPR repeat family 182 227 IPR002885 -
Mal1g5393 574 Gene3D Tetratricopeptide repeat domain 149 248 IPR011990 GO:0005515
Mal1g5393 574 Gene3D Tetratricopeptide repeat domain 23 135 IPR011990 GO:0005515
Mal1g5393 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 98 IPR002885 -
Mal1g5393 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Mal1g5393 574 Gene3D Tetratricopeptide repeat domain 249 424 IPR011990 GO:0005515
Mal1g5393 574 Pfam Pentatricopeptide repeat domain 249 286 IPR002885 -
Mal1g5393 574 PANTHER OS09G0431600 PROTEIN 8 567 IPR044781 -
Mal1g5393 574 Pfam PPR repeat 297 323 IPR002885 -
Mal1g5393 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 134 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5393 Mal-Chr1 128096712 128108236 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5393 43 360 Miscellaneous Gene Families AT4G11690 22.531 4.38e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5393 - - mtr:MTR_1g009650 1029.24