Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5270 ATGGGTCTCTGTTTTGGTTTTAGACTAAACCCAAAACTCAGATATAGTTCTGTCCCACTTCACCACTCTCCTCATTTCTTCTCTAATTCACCTATCTTCCTCTCTTCTTCATCTTCTGCTGGAGGTAGGGAAACTTTATTCAACCCGGCGAGGTTGTCTTTGCTTTCAACAATTTATGAGGACGGAGAAACTTTGCAGAAGGATTTTGGAAAGACATTTGCATTTTCGTCATCAGCATTGGAAGCACCGGAAAAGGGTTTATTGCGAGAGGAAGAAGTAACAAAGGTAAATAAAGGAAAGAGGTCGCTTAGTAGTGTGCATGAAATGATTGATAACTCGCAATTACCTTTTGAGGAGTCACATTTCGGTTTGTTAATGGAGAACCTTGGTGTTTTAGAAGAAACTTTTGCTGATTCTGAAGCATTGAGAGTTCTTGAAGAAGTTGAAGAGAATAAGAGAAACCGCAAAGTAGATGGCTATACCGGTAAAGTTATTGTCCAGTCTAGCAAGAGAAAGGAAAATAGAACAAGAAGAAAGAGAGGATCTGTTTCCATAGTACCTTCGTCTCGGTCCTTGCCTTTAGACGATAATCAAGAAGATACATTACGTTCTTCGCCGGCTTCTTTCGCAAAAAGAGCATCAAATACTAAAAATAGAATAGCAGTGATTGCTCAAAGGGAGGTGGAACTGTCAAAAGGTGTAAAGGTTCTAGCGGAATTAGAGAAAATGAGAACAGCTATAGAAGAGGATACAAAGCAAGTGGTAAGCTTGAGTAGCTGGGCAGAAGCATCTGGAGTTGATGAGAAGGTGCTACAACAGCAACTGTATCATGGCTATTATTGTAGAGATGAGTTGATACGGAGTACTCGTTCCTTAGTTCTATACTTTGCCAGAAAATACAGGGGTATGGGAATAGCATTGGAAGATTTGCTTCAGGTAGGATATATAGGTGTACTCCAAGGAGCAGAGCGATTTGACAGTACAAGAGGATACCGATTCTCAACCTATGTGCAGTACTGGATAAGGAAATCAATGTCGAGAATGGTGGCGAAATATGCTCGAGGAATCACTATTTCTTGGTCGATGAACAAGGCAATAAGTCAGATCCGTAAAGCACGAAAGGTCTTGAAAAATACGTCCATGAAATATCCCGATGATCTTGAAATTGCAAAGATGACAGGTCTTTCACTGGATAGAATCATATCAGCTAGCCATTGTCTGAGAACAGTTTCCTCAAAGCATCGTGGCATAGAATATATGGGTGATATGCCGGATTTGTCGATAGAGAGTCCTGAAGAGACTGTCATGAAACAACACATTAAGAAAGATATACATGATATCCTCCAAAGCTTGGACTCAAGGGAAAGGCAAATACTAATCCTACGATTCGGCCTTAATGATCACCAACCTAAGTCTCTTCAATCTATAGGGAATATTTTCAAAGTTACCAAAGAGTGGATAAGGAAAATAGAGAAAAAAGCTCTCACAAAATTAAGGAATGAAACAAACATCTCAAAGTTGAATTATTATTTGGATCTGTAG 1542 0.3956 MGLCFGFRLNPKLRYSSVPLHHSPHFFSNSPIFLSSSSSAGGRETLFNPARLSLLSTIYEDGETLQKDFGKTFAFSSSALEAPEKGLLREEEVTKVNKGKRSLSSVHEMIDNSQLPFEESHFGLLMENLGVLEETFADSEALRVLEEVEENKRNRKVDGYTGKVIVQSSKRKENRTRRKRGSVSIVPSSRSLPLDDNQEDTLRSSPASFAKRASNTKNRIAVIAQREVELSKGVKVLAELEKMRTAIEEDTKQVVSLSSWAEASGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSMSRMVAKYARGITISWSMNKAISQIRKARKVLKNTSMKYPDDLEIAKMTGLSLDRIISASHCLRTVSSKHRGIEYMGDMPDLSIESPEETVMKQHIKKDIHDILQSLDSRERQILILRFGLNDHQPKSLQSIGNIFKVTKEWIRKIEKKALTKLRNETNISKLNYYLDL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5270 513 Pfam Sigma-70 region 2 285 353 IPR007627 GO:0003700|GO:0006352|GO:0006355
Mal1g5270 513 MobiDBLite consensus disorder prediction 181 209 - -
Mal1g5270 513 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 19 150 - -
Mal1g5270 513 CDD Sigma70_r4 441 499 - -
Mal1g5270 513 MobiDBLite consensus disorder prediction 168 209 - -
Mal1g5270 513 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 282 501 IPR014284 GO:0003700|GO:0006352|GO:0006355
Mal1g5270 513 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 147 512 - -
Mal1g5270 513 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 147 512 - -
Mal1g5270 513 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 414 502 IPR013324 -
Mal1g5270 513 Gene3D - 433 513 IPR036388 -
Mal1g5270 513 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 225 354 IPR013325 GO:0003700|GO:0006352|GO:0006355
Mal1g5270 513 Pfam Sigma-70, region 4 448 500 IPR007630 GO:0003700|GO:0006352|GO:0006355
Mal1g5270 513 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 358 408 IPR013324 -
Mal1g5270 513 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 19 150 - -
Mal1g5270 513 Gene3D - 192 354 - -
Mal1g5270 513 PRINTS Major sigma-70 factor signature 309 322 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal1g5270 513 PRINTS Major sigma-70 factor signature 333 341 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal1g5270 513 PRINTS Major sigma-70 factor signature 451 463 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal1g5270 513 PRINTS Major sigma-70 factor signature 487 498 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal1g5270 513 PRINTS Major sigma-70 factor signature 472 487 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5270 Mal-Chr1 125874480 125878531 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5270 K03093 - gmx:100802522 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5270 1 125874480 125878531 Mal1g5270 1 125874480 125878531 ECH