Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5268 ATGCTTCATCGTTTCTCTAACCACCTTCTCCGCCACACTCATTCCATCATGTCACGTGCCATCACGTGCTCTCCCCCTCAACCCCACTCCTATTCCGTCGCATTCACCACCACCAACAACGCCGCCGTTCCTTTCTGTAACTCACCTCGCCGCGTCTCCTTTGCGCTTTTCAACAACCAGTCGCCGCAACCGTTTCGTGCGGTCCGTGCAGCTGGTGGAGGAAAGAGGGAGTATCGGAAAGTTAGAAATCCACCGCCAAAGAGCAAGAAGAAGGAGTTGGAACTCTCCGTCCCCATTTGCATTGAAGAAAATTTGCCCGATGATGATCCTGAAATCTTGAATATTGCAGAGATGCTTCGTCTAAATGTTCCAATGGCAATGAAACTGGCATTTGATGGTTTGAAAGGTTCAGAATATAAAACAAGAGATACTGCTATAGATGATGTGGGCGGGTTTGAAAGTGTTGAGTTATCCGTGCTTCTTTGCAATGATGAGTTTATACGAAAACTTAACAAGGAATGGAGAGATGAAGATCACGCTACCGATGTTCTCTCAATGTCACAACATGAACCTGGACTCAATCTTCCTATTCTTATGTTGGGTGATATTGTAATTTCTCTTGAAACAGCGGCAAGACAAGCAGAGGAAAGAGGGCACACACTTCTTGATGAGATCCGTATCCTCATGGTCCATGGATTGTTACATCTTTTGGGATTTGATCATGAACTAAGCGAGGAGGCTGAAGTAGAAATGGAGAAAGAAGAGGAACTCCTTTTGAAGAGTCTTGGTTGGAAAGGAAAAGGACTAATAAAGAGTGCATATGATGCTGAAGCAAATTCTAATTCTCACCAAAACAGTTCAGATGACAGGAAGAAAGAAGGCAGCCTTCGATTTTACAAACCAAAGTTCAGCTATATCTTCTGTGATATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTACTTCAACTGCCAAGGCTTTGAGAGAGGCCTCAGCAAGGGGCGTGAAAATTGTGATAGCCACTGGAAAAGCTCGTCCAGCTGTGATAGATATTTTTAAGAAGGTGGATTTAGCTGGAAAAGATGGCATTGTGTCAGAATTTTCTCCTGGGGTATTTTTACAGGGATTGCTTGTTTATGGTAGACAAGGTCGGGAAATATATAGGAGCAGCTTAGATCCGGACGTCTGTAGAGAGGCATGTCTTTACTCTTTGGAGAGTAAGGTTCCAGTTGTTGCATTTTCTGAAGGCCGCTGCTTAACCCTTTTTGATGACCCACTTGTTGATTCACTCCATACAATATACCATGAACCAAAGGCTGAGATCATCCCTTCTGTTGAACATCTTCTGGCATCTGCAGACGTACAGAAAATGATTTTCTTAGACACTGACCAGAATGTGGCGGATACATTGCGTCCATACTGGTCAGATGCAACAAAAGGCCGTGCCACTCTTGTTCAGGCTGTACCAGACATGCTGGAAATTGTACCCTTGGGAACATGTAAAGGGAATGGAGTAAAAGTGCTGCTTGATCACTTCGGAGTTACTGCTAATGAGATAATGGCTATTGGTGATGGCGAAAATGATGTAGAGATGCTTGAGCTGGCTTCTTTAGGCATTGCACTCAGTAATGGATCAGAGAAGACCAAAGCTGTGGCAAACGTAATTGGTTTAAGCAACGATGAAGATGGTGCAGCCGACGCCATCTATCGATATGCATTCTGA 1728 0.441 MLHRFSNHLLRHTHSIMSRAITCSPPQPHSYSVAFTTTNNAAVPFCNSPRRVSFALFNNQSPQPFRAVRAAGGGKREYRKVRNPPPKSKKKELELSVPICIEENLPDDDPEILNIAEMLRLNVPMAMKLAFDGLKGSEYKTRDTAIDDVGGFESVELSVLLCNDEFIRKLNKEWRDEDHATDVLSMSQHEPGLNLPILMLGDIVISLETAARQAEERGHTLLDEIRILMVHGLLHLLGFDHELSEEAEVEMEKEEELLLKSLGWKGKGLIKSAYDAEANSNSHQNSSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSKSQISTSTAKALREASARGVKIVIATGKARPAVIDIFKKVDLAGKDGIVSEFSPGVFLQGLLVYGRQGREIYRSSLDPDVCREACLYSLESKVPVVAFSEGRCLTLFDDPLVDSLHTIYHEPKAEIIPSVEHLLASADVQKMIFLDTDQNVADTLRPYWSDATKGRATLVQAVPDMLEIVPLGTCKGNGVKVLLDHFGVTANEIMAIGDGENDVEMLELASLGIALSNGSEKTKAVANVIGLSNDEDGAADAIYRYAF* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5268 575 Gene3D Metalloproteases ("zincins"), catalytic domain 132 264 IPR023091 GO:0004222
Mal1g5268 575 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 150 267 - -
Mal1g5268 575 Pfam haloacid dehalogenase-like hydrolase 306 570 - -
Mal1g5268 575 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 30 575 IPR002036 GO:0004222|GO:0006364
Mal1g5268 575 ProSitePatterns Uncharacterized protein family UPF0054 signature. 231 241 IPR020549 -
Mal1g5268 575 Hamap Endoribonuclease YbeY [ybeY]. 96 266 IPR002036 GO:0004222|GO:0006364
Mal1g5268 575 SFLD C2.B: Phosphomannomutase and Phosphatase Like 306 574 - -
Mal1g5268 575 Gene3D - 306 570 IPR023214 -
Mal1g5268 575 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 305 542 IPR006379 -
Mal1g5268 575 Pfam Endoribonuclease YbeY 152 261 IPR002036 GO:0004222|GO:0006364
Mal1g5268 575 ProSitePatterns Hypothetical cof family signature 2. 524 546 - -
Mal1g5268 575 MobiDBLite consensus disorder prediction 72 89 - -
Mal1g5268 575 CDD HAD_Pase 306 572 - -
Mal1g5268 575 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 156 262 IPR002036 GO:0004222|GO:0006364
Mal1g5268 575 Gene3D - 392 499 - -
Mal1g5268 575 SFLD Haloacid Dehalogenase 306 574 - -
Mal1g5268 575 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 30 575 - -
Mal1g5268 575 SUPERFAMILY HAD-like 299 573 IPR036412 -
Mal1g5268 575 TIGRFAM Cof-subfamily: Cof-like hydrolase 305 570 IPR000150 GO:0016787
Mal1g5268 575 ProSitePatterns Hypothetical cof family signature 1. 305 316 - -
Mal1g5268 575 MobiDBLite consensus disorder prediction 70 89 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5268 - - gmx:100810101 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5268 1 125857372 125865062 Mal1g5268 1 125857372 125865062 ECH