Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5227 ATGGCGAAACCTTCACTCGACGAAGAAACAACCAAGAAGGTTATACGACAGGTTGAGTTTTACTTCAGCGATAGTAATCTTCCCAGGGATGATTTCTTGAGGAAAACAGTTAATGAAAGTGAAGATGGAATGGTTAGTTTGGCTTTGCTTATTTCCTTCAATCGGATGCGGAAGCATCTTAATTTGGCTGATGATGTTAAGCCCGCTGATGTTAAGGAAGAAACTGTCAAAGCTGTTGCTGAAGTTTTGAAAAATGCTGCTTCACTCAAGCTATCAGAAGATGGGAGCAAAGTTGGCAGGATTACTGAACTTCCCAAGCCAGAAGAGTTAATTGAGCAGGTTGAGATAAGAACAATTGCTGCATCACCATTTGAATATACTGTGAAGCTTGAAGAAGTGGAGTCCTTCTTTGGTCAATATGATGCCAAGGTCAACAGTGTTCGGTTGCCCCGTCATGTTGGAGACAAAAAATTCTTCTGTGGTACTGCCCTTGTTGAGTTCTCATCAGACGAAGAAATGCAAAATGTTTTGAAGCAAAAATTAGTGTATGCGGGTGCTGAGCTAGAATTAAAGCCAAAGCAGGACTTTGACGCAGAAAGAGCAAAGGAAATAGAAAAGCATGAAAAATCTCGTAAAAATGTGGGTTCAAACCACGAGGAGGATAACACAAATGCAGAAGACGACTACCCTAAAGGCTTAGTTATAGCCTTCAAACTAAAGAGCAGTTCAGATGAAGTTTCAGAAAAGAATGGCACCGATCAACAAGCCAATGACAATAATGATGTCACCAAGACAGATGAACAAAAACCCTCTGAAGTTGCTGCTGAGGAAAGTGATCAAAAGATGTCAGAAAATGATGACAATGATAAAGAAAACAATGGAGTGAAGGAAGGAAAAGAGGCTGAAGGCGAAGAAAAGGAGCAAGAGAAAAATGGGGTGAAGGAAGTAAAGGAGACTGAAGTTGAAGAAAAGGGCCAAGAAAACAATGGGGCAGGTGAAGGAAAGGTGACTGAAGGTGTTGAAAAGGGCCAGGAAACTGGAAAAAAAACAGCTGTTATTTTCAAGAACGACTCGGATGTTGTCTTACGTGAAGATTTGAAGGTCGTCTTTCAGAAGTTTGGTGATGTTAAGTACATAGATTTCAATATGGGAGATGAGTCAGGATTCATTCGGTTTGATGAACCTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGTTCTTTCTGAAAAGGGGGGCTTAGTTGTGAAGAATTATATTGCTACTCTAGATCCAGTGACCGGTGAGGCTGAAAAAGAATACTGGAGCAAGCTTCGTGATAAACAAGATTTGCGCAGAGAAAGCTTTAGTAACCGAGGAAGGGGAGGAGGAAGGTATGGTAGAGGAGGCAAACATTCGCGTCATAGAGACAATGATTCTGGACGAGGTCGCCAAAATAAATATAGAAAGTATTAA 1452 0.4132 MAKPSLDEETTKKVIRQVEFYFSDSNLPRDDFLRKTVNESEDGMVSLALLISFNRMRKHLNLADDVKPADVKEETVKAVAEVLKNAASLKLSEDGSKVGRITELPKPEELIEQVEIRTIAASPFEYTVKLEEVESFFGQYDAKVNSVRLPRHVGDKKFFCGTALVEFSSDEEMQNVLKQKLVYAGAELELKPKQDFDAERAKEIEKHEKSRKNVGSNHEEDNTNAEDDYPKGLVIAFKLKSSSDEVSEKNGTDQQANDNNDVTKTDEQKPSEVAAEESDQKMSENDDNDKENNGVKEGKEAEGEEKEQEKNGVKEVKETEVEEKGQENNGAGEGKVTEGVEKGQETGKKTAVIFKNDSDVVLREDLKVVFQKFGDVKYIDFNMGDESGFIRFDEPEAAQKARAAAVLSEKGGLVVKNYIATLDPVTGEAEKEYWSKLRDKQDLRRESFSNRGRGGGRYGRGGKHSRHRDNDSGRGRQNKYRKY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5227 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 203 IPR000504 GO:0003723
Mal1g5227 483 PANTHER OS02G0610400 PROTEIN 4 482 - -
Mal1g5227 483 PANTHER LUPUS LA PROTEIN-RELATED 4 482 IPR045180 -
Mal1g5227 483 MobiDBLite consensus disorder prediction 204 227 - -
Mal1g5227 483 Gene3D - 2 105 IPR036388 -
Mal1g5227 483 Pfam RNA binding motif 357 453 IPR014886 GO:0003723
Mal1g5227 483 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mal1g5227 483 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mal1g5227 483 PRINTS Lupus La protein signature 159 177 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mal1g5227 483 ProSiteProfiles La-type HTH domain profile. 4 108 IPR006630 -
Mal1g5227 483 MobiDBLite consensus disorder prediction 204 229 - -
Mal1g5227 483 SUPERFAMILY "Winged helix" DNA-binding domain 7 107 IPR036390 -
Mal1g5227 483 SMART rrm1_1 118 191 IPR000504 GO:0003723
Mal1g5227 483 SMART rrm1_1 351 416 IPR000504 GO:0003723
Mal1g5227 483 MobiDBLite consensus disorder prediction 260 329 - -
Mal1g5227 483 ProSiteProfiles xRRM domain profile. 345 471 IPR014886 GO:0003723
Mal1g5227 483 SUPERFAMILY RNA-binding domain, RBD 109 195 IPR035979 GO:0003676
Mal1g5227 483 SMART la 8 101 IPR006630 -
Mal1g5227 483 SUPERFAMILY RNA-binding domain, RBD 346 449 IPR035979 GO:0003676
Mal1g5227 483 Gene3D - 108 202 IPR012677 -
Mal1g5227 483 Pfam La domain 14 84 IPR006630 -
Mal1g5227 483 Gene3D - 337 453 IPR012677 -
Mal1g5227 483 MobiDBLite consensus disorder prediction 444 483 - -
Mal1g5227 483 CDD LA_like_plant 10 100 - -
Mal1g5227 483 MobiDBLite consensus disorder prediction 244 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5227 Mal-Chr1 125155047 125160197 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5227 K11090 - gmx:100803099 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5227 1 125155047 125160197 Mal1g5227 1 125155047 125160197 ECH