LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal1g5097	ATGATGATTACTAGTTGTAGCAGTAGTGGAAATTTTGTGAAACAAGTGAAGATGAAAGGTGGTGTGATGATCACAGTAAGAGAGTGGAAGGATATTCCAGTTGAACTTTTGATGCAAATTTTGTCACTTTTGGATGATCAAATGGTGATTATAGCTTCTCATGTTTGTCATGGTTGGAGAGATGCTATTTCTTTTGGTCTTACTCGTTTATCACTCTCATGGTGTAGGAAGAACATGAATAACTTGGTCCTATCTCTTGCTCCTAAGTTCACAAAATTGCAAACTCTAATCCTTCGACAAGACACGCCACAACTAGAGGACAATGCTGTTGAGGCTGTTGCCCAATTCTGTCGCGAACTACAGATCTTGGACCTCAGTAAAAGTTTCAAGCTTACCGATCGTTCGCTGTATGCAATAGCCCTTGGTTGTAGTGATCTTACAAAACTGAACATTAGTGGATGTTCAGCCTTCAGTGACAATGCTTTGGCTTACCTAGCTAGTTTATGCAGAAAGCTGAAAATTTTGAATCTATGTGGTTGTGTTAAAGCTGTTTCAGATACTGCATTACAGGCAATTGGACATTACTGCAATCAGTTACAGACTTTGAATCTTGGCTGGTGCGAACAAGTCAGCGATGTTGGAGTAATGAGTTTAGCATATGGCTGCCCTGATCTTAGAACACTCGACTTATGTGGTTGTGTCCTTATAACAGACGATAGTGTAATAGCATTGGCAGACAGGTGTCCTCATCTGAGGTCCCTTGGGCTGTACTACTGCAAAAACATAACAGACAGAGCAATGTACTCATTGGCACAAAGCAAAGTGAATAATAAGATGTGGGGATCTGAGAATGAAGAGGATGGTCTCGAAACTTTGAACGTTAGCCAGTGTACATCACTCACTCCTTCTGCTGTTCAGGCTGTATGTGACTCATCCCCTGCACTTCACACCTGCTCAGGAAGACATTCACTCATCATCAGTGGCTGTCTTAATCTTACATCTGTGCATTGTGCTTGTTGTGTCCGGCCGCACCGTGCTATAAACGCTTTTCCTCACTCAGCTCATTGA	1068	0.4204	MMITSCSSSGNFVKQVKMKGGVMITVREWKDIPVELLMQILSLLDDQMVIIASHVCHGWRDAISFGLTRLSLSWCRKNMNNLVLSLAPKFTKLQTLILRQDTPQLEDNAVEAVAQFCRELQILDLSKSFKLTDRSLYAIALGCSDLTKLNISGCSAFSDNALAYLASLCRKLKILNLCGCVKAVSDTALQAIGHYCNQLQTLNLGWCEQVSDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIALADRCPHLRSLGLYYCKNITDRAMYSLAQSKVNNKMWGSENEEDGLETLNVSQCTSLTPSAVQAVCDSSPALHTCSGRHSLIISGCLNLTSVHCACCVRPHRAINAFPHSAH*	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal1g5097	355	SUPERFAMILY	F-box domain	29	72	IPR036047	GO:0005515
	Mal1g5097	355	Pfam	F-box-like	30	63	IPR001810	GO:0005515
	Mal1g5097	355	SUPERFAMILY	RNI-like	66	336	-	-
	Mal1g5097	355	Gene3D	Ribonuclease Inhibitor	66	340	IPR032675	-
	Mal1g5097	355	PANTHER	F-BOX SKP2A-LIKE PROTEIN	13	337	-	-
	Mal1g5097	355	Gene3D	-	25	65	-	-
	Mal1g5097	355	Pfam	Leucine Rich repeat	222	245	IPR001611	GO:0005515
	Mal1g5097	355	Pfam	Leucine Rich repeat	248	271	IPR001611	GO:0005515
	Mal1g5097	355	Pfam	Leucine Rich repeat	196	219	IPR001611	GO:0005515
	Mal1g5097	355	PANTHER	UNCHARACTERIZED	13	337	-	-
	Mal1g5097	355	SMART	LRR_CC_2	64	89	IPR006553	-
	Mal1g5097	355	SMART	LRR_CC_2	222	247	IPR006553	-
	Mal1g5097	355	SMART	LRR_CC_2	248	273	IPR006553	-
	Mal1g5097	355	SMART	LRR_CC_2	196	221	IPR006553	-
	Mal1g5097	355	SMART	LRR_CC_2	90	116	IPR006553	-
	Mal1g5097	355	SMART	LRR_CC_2	117	142	IPR006553	-
	Mal1g5097	355	SMART	LRR_CC_2	143	168	IPR006553	-
	Mal1g5097	355	SMART	LRR_CC_2	286	311	IPR006553	-
	Mal1g5097	355	SMART	LRR_CC_2	169	195	IPR006553	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal1g5097	Mal-Chr1	122599793	122602147	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal1g5097	K03875		-	gmx:100793275	590.882

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal1g5097	1	122599793	122602147	Mal1g5097	1	122599793	122602147	ECH