Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4978 ATGGGTTTCCGATCCCTCTTCCATCGAAAGAAGAGATTTGAAAATACAACATCTTCTTCCCTGACAACGGGAACCACAAACACAACCTTTATCTCTCGCACCCCATCTCTCCAATCACGTGTCCAATTCACCGAGGATTTGGAGCATGTGTTTCGGAAATTTGATGTTAATGGTGATGGCAAAATCTCTTCTTTTGAATTAGGGTCCATCATGGGAAGCCTAGGGCAACCCGCAACGGAAGAAGAACTTGGTAATATGATCAAAGAGGTTGATGCTGATGGTGATGGTTACATCAATCTCGAGGAATTTATCGAGTTGAACACCAAAGACATCGATCCCAATGAGATTTTGGAGAATCTCAAAGATGCTTTTTCTATTTTTGACATTGACAAAAATGGTTCTATTTCGGCAGAGGAGTTGCACAATGTTATGGTGAGTCTTGGAGATCAATGCTCCCTCGCCGAGTGTCAAAAGATGATAGGTGGTGTTGATAACGACGGTGATGGAATGATTAATTTTGAAGAGTTTAAGAAGATGATGATGGGCTCCACCTTTGGATCGATGGAAAAAATTAATCAAGGTGATAGCGAAACATGA 597 0.4137 MGFRSLFHRKKRFENTTSSSLTTGTTNTTFISRTPSLQSRVQFTEDLEHVFRKFDVNGDGKISSFELGSIMGSLGQPATEEELGNMIKEVDADGDGYINLEEFIELNTKDIDPNEILENLKDAFSIFDIDKNGSISAEELHNVMVSLGDQCSLAECQKMIGGVDNDGDGMINFEEFKKMMMGSTFGSMEKINQGDSET* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4978 198 SMART efh_1 119 147 IPR002048 GO:0005509
Mal1g4978 198 SMART efh_1 82 110 IPR002048 GO:0005509
Mal1g4978 198 SMART efh_1 46 74 IPR002048 GO:0005509
Mal1g4978 198 SMART efh_1 155 183 IPR002048 GO:0005509
Mal1g4978 198 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Mal1g4978 198 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Mal1g4978 198 PANTHER CALCIUM BINDING PROTEIN 25 189 - -
Mal1g4978 198 ProSitePatterns EF-hand calcium-binding domain. 164 176 IPR018247 -
Mal1g4978 198 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Mal1g4978 198 Pfam EF-hand domain pair 45 105 IPR002048 GO:0005509
Mal1g4978 198 Pfam EF-hand domain pair 118 180 IPR002048 GO:0005509
Mal1g4978 198 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 25 189 - -
Mal1g4978 198 ProSitePatterns EF-hand calcium-binding domain. 128 140 IPR018247 -
Mal1g4978 198 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Mal1g4978 198 CDD EFh 120 181 IPR002048 GO:0005509
Mal1g4978 198 Gene3D - 9 109 - -
Mal1g4978 198 Gene3D - 110 194 - -
Mal1g4978 198 ProSiteProfiles EF-hand calcium-binding domain profile. 151 186 IPR002048 GO:0005509
Mal1g4978 198 ProSitePatterns EF-hand calcium-binding domain. 91 103 IPR018247 -
Mal1g4978 198 SUPERFAMILY EF-hand 44 182 IPR011992 -
Mal1g4978 198 CDD EFh 46 106 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4978 Mal-Chr1 120110352 120110948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4978 6 183 EF-hand Containing Proteins AT1G24620 59.218 4.23e-68 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4978 K13448 - oeu:111396559 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g4978 1 120110352 120110948 Mal1g4978 1 120110352 120110948 ECH