Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4792 ATGGAGGTTGTTTTAGCATCTTCCTCTGTTGATGATGGGATAGGTTGCTGGGACCTTCGTACTGGTGCTGAGCAACTACGCTATAAATCATGTTCTTCCCCTTTTCATGGCCTTGTCTCTCTTGGTTCTCGTTTACTTGCTTCTTCTCAGCTTCGTGACCCTTCTTCTACCTCTGGTTCTGTTTTCTTCTGGTCCTTCTCCAAGCCTCAAGTTGAAGTTAAGAGCTTTCCTGCTGAACCTATTAAGCCTCTTGCTGCAAATCACCTTGGTACTTATCTAGCTGGTGGATCTTTGTCAGGTGATATATACTTGTGGGAGGTTGAAACTGGCAGATTGCTTAAGAAGTGGCATGCTCATTTAAGGGCTATCACTTGCCTGGTATTTTCTGAAGATGATTCCCTGCTGATATCTGGTTCCGAAGATGGATATGTAAGAGTTTGGTCTGTTTTCAGTTTATTTGATGATTTGAGAAGCCGGGAAGAAAATAATCTTTACGAGTATAGTTTTTCGGAGCACACCATGCGCGTAACCGATGTTGTGATTGGTAATGGAGGGGGCAATGCAATTATAGTTTCAGCATCAGACGATCGGACGTGTAAGGTATGGAGCTTATCTAGTGGAACACTACTAAGAAGTATAGTTTTCCCTTCAATAATTAATGCCATTGCATTGGATCCCGCTGAACATGTCTTTTATGCTGGGAGTAGTGATGGAAAAATATTTATATCTGCACTTAACACTGCAAAAATCAATAGTAATGATTATGGGATGCATATCATTGGTTCATATTCTAACCACAGCAAGGCAGTTACTTGCTTAGCATATAGCAAAAGTTGGGGTTTGCTACTTTCTGGGTCTGAGGATGGCATAGTTCGTGTTTGGAACACTAAAACTCGCAACATTGTCCGCATGTTTAAACACGCTAAGGGACCTATAACTAATATTCTTGTTGTTAGACAAGAAATTAACCCAAGCAATCATATATCTTCTTATTTACCAGCATCCACAAAAAAGCAGGGGGCTTATTTACTCCCTCCTTTAGAAAAATATGCAAACTCAACAGATGAAGATTCAGATGTAAAGACTGTTATCAACCTAGGTGATAGCAGGGGATGCATGGATGTTTCATACAACAGTTCTAATGTGATATCTAATCACATTAAGGAACATCAGCAACAAGGTTCAGCCGCTGCCTCTGAAATCGAGATAGAGAAACTAAAACATGAGTATCGAAGGACAGCTGAGATGGCTAACCAATGGAAGAAATTGTATGAAAATTTGCATGAATTTGGTATAAAGGAGCTATTGGATGGTGGTCAAACAAGAACCTTCAATGAAGATGACAAATAA 1350 0.4007 MEVVLASSSVDDGIGCWDLRTGAEQLRYKSCSSPFHGLVSLGSRLLASSQLRDPSSTSGSVFFWSFSKPQVEVKSFPAEPIKPLAANHLGTYLAGGSLSGDIYLWEVETGRLLKKWHAHLRAITCLVFSEDDSLLISGSEDGYVRVWSVFSLFDDLRSREENNLYEYSFSEHTMRVTDVVIGNGGGNAIIVSASDDRTCKVWSLSSGTLLRSIVFPSIINAIALDPAEHVFYAGSSDGKIFISALNTAKINSNDYGMHIIGSYSNHSKAVTCLAYSKSWGLLLSGSEDGIVRVWNTKTRNIVRMFKHAKGPITNILVVRQEINPSNHISSYLPASTKKQGAYLLPPLEKYANSTDEDSDVKTVINLGDSRGCMDVSYNSSNVISNHIKEHQQQGSAAASEIEIEKLKHEYRRTAEMANQWKKLYENLHEFGIKELLDGGQTRTFNEDDK* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4792 449 CDD WD40 4 295 - -
Mal1g4792 449 Pfam WD domain, G-beta repeat 168 203 IPR001680 GO:0005515
Mal1g4792 449 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515
Mal1g4792 449 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515
Mal1g4792 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Mal1g4792 449 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Mal1g4792 449 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Mal1g4792 449 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Mal1g4792 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Mal1g4792 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Mal1g4792 449 Gene3D - 1 215 IPR015943 GO:0005515
Mal1g4792 449 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Mal1g4792 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Mal1g4792 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Mal1g4792 449 PANTHER WD-REPEAT PROTEIN 18 1 438 IPR045227 -
Mal1g4792 449 SMART WD40_4 69 106 IPR001680 GO:0005515
Mal1g4792 449 SMART WD40_4 162 203 IPR001680 GO:0005515
Mal1g4792 449 SMART WD40_4 256 295 IPR001680 GO:0005515
Mal1g4792 449 SMART WD40_4 206 244 IPR001680 GO:0005515
Mal1g4792 449 SMART WD40_4 109 148 IPR001680 GO:0005515
Mal1g4792 449 Coils Coil 396 423 - -
Mal1g4792 449 Gene3D - 216 326 IPR015943 GO:0005515
Mal1g4792 449 SUPERFAMILY WD40 repeat-like 4 317 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4792 Mal-Chr1 115434821 115439983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4792 113 315 Miscellaneous Gene Families AT5G08390 22.439 4.26e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4792 K14829 - gmx:100791195 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g4792 1 115434821 115439983 Mal1g4792 1 115434821 115439983 ECH