Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3831 ATGTCAGAGTATTTTTGCAGCGACTGCAAACGCGAAACCGAAGTCGTATTCGACCACTCAGCAGGCGACACAGTCTGTTCAGAATGCGGACTCGTACTCGAATCACGCTCCATCGATGAAACCTCTGAATGGCGCACTTTCGCCAATGAATCCAACGATCACGATCCTAACCGTGTTGGTGGTCCTTCTAATCATCTCTTAACTGACGGTGGTCTCTCCACCTTCATCGCTAAACCTAATGGAGGCTCCAGCGAGTTTCTTTCTTCGACTCTTAGTCGCTGGCAGAATCGTGGCTCTAACCCTGATCGTGCTCTTATTCTTGCTTTTAAAACTATTAGTACTATGTGTGAAAGGTCCGTTAAGGATCGAGCAAATGAGATATATAAGAGGGTTGAAGACCAAAAGTCTAGTAGAGGAAGAAATCAAGATGCTTTGTTGGCTGCTTGTCTCTACATCGCTTGTCGACAAGAAGAGATGCCACGAACTGTAAAGGAAATTTGTACTGTTGCCAATGGTGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAGTACATAGTGAGACAACTTGGTTTGGATAATGGTCAGTCTGTGGAGATGGGCACAATACATGCTGGAAACTTTATGAAACGATTCTGTTCCAATCTTAATTTGAACAACCAAACTATTAAAGTTGCTCTGGAAGCTGTGAAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCTATATCAATTGCTGCTGCAATTATATACATCATAACTCAGCTTTCTGGTGATAAAAAACCTCTCAAAGATATTTCAATTGCAACAGGAGTTGCAGAAGGAACTATTAGAAACTCCTACAAGGATCTTTATCCCTATGTATCAAAAATAATACCAGATTGGTATGCAAAGGAGGAGGATTTGAAGAACCTTTCTAGCCCTTGA 924 0.4188 MSEYFCSDCKRETEVVFDHSAGDTVCSECGLVLESRSIDETSEWRTFANESNDHDPNRVGGPSNHLLTDGGLSTFIAKPNGGSSEFLSSTLSRWQNRGSNPDRALILAFKTISTMCERSVKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEEMPRTVKEICTVANGATKKEIGRAKEYIVRQLGLDNGQSVEMGTIHAGNFMKRFCSNLNLNNQTIKVALEAVKKSEEFDIRRSPISIAAAIIYIITQLSGDKKPLKDISIATGVAEGTIRNSYKDLYPYVSKIIPDWYAKEEDLKNLSSP* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3831 307 Pfam TFIIB zinc-binding 4 47 IPR013137 -
Mal1g3831 307 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Mal1g3831 307 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Mal1g3831 307 PRINTS Transcription initiation factor IIB signature 207 225 IPR000812 GO:0006352|GO:0070897
Mal1g3831 307 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Mal1g3831 307 PRINTS Transcription initiation factor IIB signature 147 166 IPR000812 GO:0006352|GO:0070897
Mal1g3831 307 PRINTS Transcription initiation factor IIB signature 174 189 IPR000812 GO:0006352|GO:0070897
Mal1g3831 307 PRINTS Transcription initiation factor IIB signature 239 255 IPR000812 GO:0006352|GO:0070897
Mal1g3831 307 PRINTS Transcription initiation factor IIB signature 271 285 IPR000812 GO:0006352|GO:0070897
Mal1g3831 307 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 307 - -
Mal1g3831 307 ProSitePatterns Transcription factor TFIIB repeat signature. 139 154 IPR023486 -
Mal1g3831 307 SMART cyclin_7 104 187 IPR013763 -
Mal1g3831 307 SMART cyclin_7 206 285 IPR013763 -
Mal1g3831 307 CDD CYCLIN 116 180 IPR013763 -
Mal1g3831 307 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Mal1g3831 307 SUPERFAMILY Zinc beta-ribbon 3 50 - -
Mal1g3831 307 Pfam Transcription factor TFIIB repeat 105 179 IPR013150 GO:0017025
Mal1g3831 307 Pfam Transcription factor TFIIB repeat 200 284 IPR013150 GO:0017025
Mal1g3831 307 SUPERFAMILY Cyclin-like 202 304 IPR036915 -
Mal1g3831 307 Gene3D - 204 306 - -
Mal1g3831 307 Gene3D - 5 188 - -
Mal1g3831 307 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 307 IPR000812 GO:0006352|GO:0070897
Mal1g3831 307 SUPERFAMILY Cyclin-like 106 191 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3831 Mal-Chr1 75920900 75925351 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3831 K03124 - gmx:100790355 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3831 1 75920900 75925351 Mal1g3831 1 75920900 75925351 ECH
Mal3g3497 3 112003259 112006869 Mal1g3831 1 75920900 75925351 PCT