Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2109 ATGCAAGTTCTATGTAGTAAAACTGCTACTCACATTTTTTCACAATCCCGCTTCCAAGAAACTTGTTTACGTGTTCTTTCATTCTGCAACTCAAACTCCCTCAAAGAAGGAATATGCATTCATAGCCCCATAATCAAACTTGGTCTTCAACATGACTTGTATTTAACCAACAATTTACTCTCTTTATATGCTAAAACCTTTGGAGTTCATCAAGCACGCCAACTGTTCGATGAAATGCCTGACAGAGACGTCGTATCATGGACAACGGTTCTGTCTTCTCACACTAAGACTAAGCATCATTTTGATGCACTTGAGTTGTTTGATATGATGTTAGGTTCGGGTGAGTATCCAAATGAGTTTACATTGTCTAGTGCTTTAAGGTCGTGTTCTGCTTTAGGGGATTTTGAACGTGGGACGCGGATTCATGCTTCTGCTGTGAAGCTTGGGTTAGAGATGAATCGTTTTGTTGGTACTTCTTTGATTGAGTTTTATACCAAGTCTGGTTGTTGTAGTGTTGAAGGGTATCAATTGCTTTCGTTGGTGAAGGATGGTGGTGATGTTGTGTCTTGGACAACAATGATGTCTTCTTCAGTGGAAAATGGTAAATGGAGTGAAGCTTTTGAAATCTATGTTAAAATGATTGAATCGGGTGTTTACCCGAATGAGTTCACATTTGTTAAACTATTAGGTACGGTGTCTTCTTTTCTTGGTTTGGCTTATCGGAAAATGCTGCATGCACAGTTAGTCGTTTTTGGTGCTGAAATGAATTTGGTGTTGAAGACGGCCGTTGTTGATATGTATTCGAAATGCAGACGGATGGAAGATGCTGTTAAGGTTTTTAATCTGACACCTGAATATGATGTGTATTTATGGACCACCATTATCTCTGGATTTACTCAAAATTTGCAGGTTAGAGAGGCTGTCAGTGCATTTCGTGATATGGAATTATCTGGCATCCTACCAAATAATTTTACGTATTCTAGTTTATTTAATGCTAGCTCCTCAATTTTATCATTGGACCTAGGGGAACAATTTCATTCGCGTGTTATCATTGTTGGACTTGAGGATGATCTTTATATAGGAAATTCACTGGTTGATATGTATATGAAATGCTCCCACATCACTACAAATGCTGTGAAAGCTTTTAGAGAGATAGCATCACCAAATGTCAACTGTTGGACTTCTTTGATTGCTGGTTTTGCAGAAAAAGGATTAGAAGAATCTTTTCAGTTGTTTGGTGAGATGCAAGCAGCAGGAGTACAACCAAATTCCTTTACAATGTCTGCCATTCTTGGAGCTTGCAGCAAAACAAGGTCTCTTGTTCCAACAATGATGCTCCATGGACATATCATAAAAACAAAAGCAGACATAGATGTAGCTGTTGGGAATGCTCTTGTAGATACTTATGCTGGAGTGGGGATGACAGACGAGGCATGGTCTGTAATTGGTATGATGAATCGTAGAGATTCCATCACATACACATGTTTAGCCGCAAGACTAAACCAAAAGGGGGATCATGGAATGGCATTAAAAGTTTTCATTCACATGTGCAATGATGGGATTAAGATGGATGAATTTAGCTTGGCAAGTTTCTTATCAGCTGCAGCTGGCTTAGGCACTATGGAAACTGGAAAGCAACTGCATTGTTATTCTGTCAAATCAGGCTTCCAGAGATATCACTCAGTTTCAAACAGCTTAGTTCACTTGTACAGCAAATGTGGTAGTATCCACGATGCAAATAGAGCTTTCAAAGATATAAGTGAGCCAGATGCATTTTCATGGAACGGTTTGATATCTGGATTTTCATGGAACGGTTTGATATCCCATGCTCTTTCTGCTTTTGATGACATGAGGTTAGCAGGAGTTAAACCTGATTCTATAACACTGTTGTCACTTATTTCTGCTTGCAGCCATGGTAGCTTATTAGAACAGGGTCTTGAGTATTTCTATTCTATGCAAAAAGAGTACCATATAACCCCAAAACTGGATCACTACGTGTGTTTAGTTGATCTCCTTGGTAGAGGTGGTCGCCTAGAGGAAGCTATGGGTGTTATTGAAAATATGCCTTTCAAGCCAGACTCTTTGATTTGTAAAACTTTATTAAATGCTTGCAATTTACATGGAAATGTTGCTTTGGGAGAAGATATGGCAAGGCGATGTCTTGAGCTTGATCCATCTGATCCTGCAATATATTTGCTGCTTGCAAACTTATATGACAATGCTGGACTCTCTGATTTTGGAGAGAAGACACGTCGGTTGATGAGAGAAAGAGGTTTAAGGAGAAGTCCTGGGCAGTGCTGGATGGAGATAAGAAGCAGAGTTCATCACTTCTCCGCAGGAGAGAAGATCAATGAGGATGAGATTAATGAAAAGCTAGAGTTTCTTATAACTGAATTTAGGAATAGAGGGTATCAATACCAAGAGAATGAAGATAAGTTATACCACCCAGAGCAATTGGCAGTTGCATATGGTGTTCTTAATGCACCATCTACGGCTCCAATACGTATATACAAGAATTCACTGATCTGCCCTCACTGCCATACCTTTATAATGCTTTCGTCACAATTGATTGGTAGGGAGATAATTGTGAGGGATAGGAAACGGTTCCATTTCTTTAAGGACGGCCAGTGTTCTTGCAGAGGTCACTCGTGA 2652 0.3956 MQVLCSKTATHIFSQSRFQETCLRVLSFCNSNSLKEGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHQARQLFDEMPDRDVVSWTTVLSSHTKTKHHFDALELFDMMLGSGEYPNEFTLSSALRSCSALGDFERGTRIHASAVKLGLEMNRFVGTSLIEFYTKSGCCSVEGYQLLSLVKDGGDVVSWTTMMSSSVENGKWSEAFEIYVKMIESGVYPNEFTFVKLLGTVSSFLGLAYRKMLHAQLVVFGAEMNLVLKTAVVDMYSKCRRMEDAVKVFNLTPEYDVYLWTTIISGFTQNLQVREAVSAFRDMELSGILPNNFTYSSLFNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNSLVDMYMKCSHITTNAVKAFREIASPNVNCWTSLIAGFAEKGLEESFQLFGEMQAAGVQPNSFTMSAILGACSKTRSLVPTMMLHGHIIKTKADIDVAVGNALVDTYAGVGMTDEAWSVIGMMNRRDSITYTCLAARLNQKGDHGMALKVFIHMCNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFQRYHSVSNSLVHLYSKCGSIHDANRAFKDISEPDAFSWNGLISGFSWNGLISHALSAFDDMRLAGVKPDSITLLSLISACSHGSLLEQGLEYFYSMQKEYHITPKLDHYVCLVDLLGRGGRLEEAMGVIENMPFKPDSLICKTLLNACNLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDNAGLSDFGEKTRRLMRERGLRRSPGQCWMEIRSRVHHFSAGEKINEDEINEKLEFLITEFRNRGYQYQENEDKLYHPEQLAVAYGVLNAPSTAPIRIYKNSLICPHCHTFIMLSSQLIGREIIVRDRKRFHFFKDGQCSCRGHS* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2109 883 Gene3D Tetratricopeptide repeat domain 563 798 IPR011990 GO:0005515
Mal1g2109 883 Gene3D Tetratricopeptide repeat domain 7 143 IPR011990 GO:0005515
Mal1g2109 883 PANTHER OS03G0861900 PROTEIN 184 269 - -
Mal1g2109 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Mal1g2109 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Mal1g2109 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 590 624 IPR002885 -
Mal1g2109 883 PANTHER OS07G0578800 PROTEIN-RELATED 184 269 IPR045215 GO:0003723|GO:0009451
Mal1g2109 883 PANTHER OS07G0578800 PROTEIN-RELATED 271 772 IPR045215 GO:0003723|GO:0009451
Mal1g2109 883 PANTHER OS07G0578800 PROTEIN-RELATED 33 171 IPR045215 GO:0003723|GO:0009451
Mal1g2109 883 PANTHER OS03G0861900 PROTEIN 271 772 - -
Mal1g2109 883 PANTHER OS03G0861900 PROTEIN 33 171 - -
Mal1g2109 883 TIGRFAM PPR: pentatricopeptide repeat domain 85 119 IPR002885 -
Mal1g2109 883 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Mal1g2109 883 TIGRFAM PPR: pentatricopeptide repeat domain 289 322 IPR002885 -
Mal1g2109 883 TIGRFAM PPR: pentatricopeptide repeat domain 592 626 IPR002885 -
Mal1g2109 883 Gene3D Tetratricopeptide repeat domain 444 559 IPR011990 GO:0005515
Mal1g2109 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Mal1g2109 883 Gene3D Tetratricopeptide repeat domain 239 341 IPR011990 GO:0005515
Mal1g2109 883 Gene3D Tetratricopeptide repeat domain 342 443 IPR011990 GO:0005515
Mal1g2109 883 Pfam PPR repeat 261 281 IPR002885 -
Mal1g2109 883 Pfam PPR repeat 665 688 IPR002885 -
Mal1g2109 883 Pfam PPR repeat 85 114 IPR002885 -
Mal1g2109 883 Pfam PPR repeat 491 521 IPR002885 -
Mal1g2109 883 Pfam PPR repeat 57 83 IPR002885 -
Mal1g2109 883 Pfam E motif 707 769 IPR046848 -
Mal1g2109 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 422 IPR002885 -
Mal1g2109 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Mal1g2109 883 Pfam PPR repeat family 589 637 IPR002885 -
Mal1g2109 883 Pfam PPR repeat family 186 229 IPR002885 -
Mal1g2109 883 Pfam PPR repeat family 388 435 IPR002885 -
Mal1g2109 883 Pfam PPR repeat family 287 332 IPR002885 -
Mal1g2109 883 Pfam DYW family of nucleic acid deaminases 807 881 IPR032867 GO:0008270
Mal1g2109 883 Gene3D Tetratricopeptide repeat domain 144 231 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2109 Mal-Chr1 27596508 27599159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2109 103 882 Glycoside Hydrolase AT3G49170 33.745 2.07e-148 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2109 - - gmx:100791770 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2109 1 27596508 27599159 Mal1g2109 1 27596508 27599159 ECH