Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2036 ATGAATTCAATAACCCTTTTAGGTTTAAGGAAAAGGGTTGTCCATAAAATTTCTCGTTGTTTTGTTATTTCGCGGAGATTGTGTAATAATACGTTTGGTGGTAGTAATAATAATGAGTTTGAATGTATTGAGGAGCCTTTGAAGAAAATAGTTTCTGATTTTGATTCTAATTTGGATGAAGGGTTTCATTTTAATGAGGATTCAAGTTTTGATCAAAAGCCGTTTTCGCTTAGAAAAGGGTTCTTAGAAAGTGTGAAGTTAGATGCTAAGAGGGCTCTTGAGGTTCTTAGACAAGATGGTCCTGGTTTAGATGCTAGGTTAGTTTTAGAGGAGTTGGGTATAAAACCTTCGGGGATTCTTGTTAGAGAGGTTCTCTTTGGAATTTTGAAGAGCATAAATAGTGAGAATAAGACCAGGTGTGCAAAGCTGGCTTATAAGTTTTTTGTGTGGTGTGGTCAGCAGGAGGGTTATTTGCACACTGCGAATGCCTATCACTTGATTATGAATATATATGCTGAGTGCGAAGAGTTTAAGGCGTTGTGGAGGTTGGTTGATGAGATGATTGAGAAAGGTTATCCGGCTACTGCTCGTACCTTCAATATTTTGATTCGTACTTGTGGCGAGGCGGGCCTGGCTAAGACATTGGTGGAGAGGTTCATCAAATCAAAGACCTTTAACTATAGGCCTTTTAAGCATTCCTATAATGCAATTCTACACAGTTTTCTCGTATTAAAACAGTACAAGTTAATTGAGTGGGTTTATGAACAGATGTTGCTTGATGGGTTTTCATCAGATGTTTTAACTTATAATATTGTCATGTATGCTAAGTACAGACTTGGAAAGGTGGATCAGTTCTCTGCACTGCTCGAGGAGATGGATAGAAATGGATTTTCTCCAGATTTTCATACCTACAACATTATTCTTCATGTTCTTGGTAAAGAGTACGATCCACATAAAGCTCTTAAAGTTTTAAATTACATGAGAGAAACAGGTATAGAGCCAACTGTACTTCATTATACCACATTGATAGATGGACTCAGCAGAGCCGGGAAACTGGATGCTTGCAAATATTTTTTCGATGAAATGAAAAAGAATGGGTGCTTGCCAGATGTGGTGGCTTATACTGTTATGATAACCGGATATGTAGTGGCCGGTGAGCTTGAGAAAGCGCAGGAAATGTTTCAGGAGATGCTTTCCAAGGAACAAGTCCCAAATGTTTTTACATACAATTCCATGATTCGGGGATTATGCATGGCAGGGAAATTCGATGAAGCATGCTCAATGTTCAAGGAAATGGAAAGCAAAGGTTGTAGCCCAAACTCGGTTGTCTATATTACATTAGTGACTTGTTTGCGGAATGCTGGAAGGGTTGCTGATGCTCGTGAGGTGATAAAACAAATGATGGAGACAGGGAAGTATGCCCATTTAGTTTCAAGATTCAAAGGGCCAATCACCTGCTACGTCTTCAGCTGGATAGATGCTGGAGAAAAGAATTTATAG 1500 0.3893 MNSITLLGLRKRVVHKISRCFVISRRLCNNTFGGSNNNEFECIEEPLKKIVSDFDSNLDEGFHFNEDSSFDQKPFSLRKGFLESVKLDAKRALEVLRQDGPGLDARLVLEELGIKPSGILVREVLFGILKSINSENKTRCAKLAYKFFVWCGQQEGYLHTANAYHLIMNIYAECEEFKALWRLVDEMIEKGYPATARTFNILIRTCGEAGLAKTLVERFIKSKTFNYRPFKHSYNAILHSFLVLKQYKLIEWVYEQMLLDGFSSDVLTYNIVMYAKYRLGKVDQFSALLEEMDRNGFSPDFHTYNIILHVLGKEYDPHKALKVLNYMRETGIEPTVLHYTTLIDGLSRAGKLDACKYFFDEMKKNGCLPDVVAYTVMITGYVVAGELEKAQEMFQEMLSKEQVPNVFTYNSMIRGLCMAGKFDEACSMFKEMESKGCSPNSVVYITLVTCLRNAGRVADAREVIKQMMETGKYAHLVSRFKGPITCYVFSWIDAGEKNL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2036 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Mal1g2036 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Mal1g2036 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Mal1g2036 499 Gene3D Tetratricopeptide repeat domain 118 242 IPR011990 GO:0005515
Mal1g2036 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Mal1g2036 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Mal1g2036 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Mal1g2036 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Mal1g2036 499 Pfam PPR repeat family 334 381 IPR002885 -
Mal1g2036 499 Pfam PPR repeat family 404 451 IPR002885 -
Mal1g2036 499 Pfam PPR repeat family 265 311 IPR002885 -
Mal1g2036 499 TIGRFAM PPR: pentatricopeptide repeat domain 407 441 IPR002885 -
Mal1g2036 499 TIGRFAM PPR: pentatricopeptide repeat domain 372 406 IPR002885 -
Mal1g2036 499 TIGRFAM PPR: pentatricopeptide repeat domain 442 471 IPR002885 -
Mal1g2036 499 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Mal1g2036 499 TIGRFAM PPR: pentatricopeptide repeat domain 268 300 IPR002885 -
Mal1g2036 499 TIGRFAM PPR: pentatricopeptide repeat domain 339 371 IPR002885 -
Mal1g2036 499 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 482 - -
Mal1g2036 499 SUPERFAMILY TPR-like 370 471 IPR011990 GO:0005515
Mal1g2036 499 Pfam PPR repeat 233 262 IPR002885 -
Mal1g2036 499 PANTHER OS10G0506000 PROTEIN 1 482 - -
Mal1g2036 499 Gene3D Tetratricopeptide repeat domain 329 399 IPR011990 GO:0005515
Mal1g2036 499 Gene3D Tetratricopeptide repeat domain 400 472 IPR011990 GO:0005515
Mal1g2036 499 Gene3D Tetratricopeptide repeat domain 244 328 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2036 Mal-Chr1 26707109 26711582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2036 155 483 Glycosyltransferase AT1G05670 25.946 8.32e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2036 - - gmx:100792512 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2036 1 26707109 26711582 Mal1g2036 1 26707109 26711582 ECH