LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal1g2023	ATGGGAAAGCAAAAGCAACAAGTAATTTCCCGTTTCTTCGCCCCAAAACCCAAAATCCCTTCATCGACTACCGACCCACCACCACCACCGCCACCGCCACCTTCTTCCTCTCCCAAAATTACCACCACCGTCTCTTTCTCTCCATCCAAACGCCGCTTAATCTCTCAACTAACATCATCCCCTAACAAACAGCCCAAACTCTCCCCACACTCTAACAACCCTGTACCCTCTCCACCCAATCCTTCCCTTCACCAACGCTTCCTCCAGAAGCTTCTAGAACCTTCTAATCCAACCCCACAAGCTCCTTCATCTTCCAAACCTGTAAAGTTCACTCCTTTAGAGCATCAAGTGGTGGAATTGAAAGCTAAATACCCTGATGTTCTTTTAATGATTGAAGTTGGTTACAAGTATCGATTTTTCGGCCAAGATGCTGAGAATGCTGCTAGGGTTTTGGGTATTTATGCTCACATGGATCATAATTTTTTAACTGCTAGCATACCAACTGTTCGATTAAATGTCCATGTGAGGAGGCTTGTCAGTGCTGGGTATAAAGTTGGTGTTGTTAAGCAGACTGAGACTGCTGCTATTAAGTCCCATGGGTTGAACCGGGCCGGCCCATTTTGTAGAGGGCTGTCGGGGTTGTACACAAAGGCGACGTTGGAGGCGGCTCATGATTTGGGAGGAGGGGAAGATGAGTGTGGGACAGTGAGTAACTATTTATTGTGTGTTGTGGAGAAGAGCATTTTGGGAGAGAAAAAATTGAATTGTGGTGTGGAAGGTGGTTTTGATGTGAGGATTGGAATTGTTGGTGTGGAGATATCGACCGGAGATGTTGTTTATGGAGAGTTTAATGACAATTTTTTGAGGAGTGAACTTGAGGCTGTTGTTGTTAGCTTGTCTCCTGCTGAACTGCTTCTCGGGGACCCTCTTTCAAAACAAACTGAGAAGTTACTACTGGCTTTTGCTGGACCCTCCTCAAATACTCGGGTGGAGCGTGCCTCACGAGATTGCTTCACCAACGGAGGCGCTTTTGCTGAAGTTATGACATTGTATGAGAACACAAATGTTGACAGTCCAGATTCAATGCAAAACAATGAATTGACTGAGCATGGAAGTCAGCAGATGGTAGTGAAGGAGGTGATGAACCTGCCAGATTTGGCTGTGGAAGCTTTGGCCTTAACTATTCGCCATTTGAAGGGATTTGGTTTTGAAAGAATTCTGTGCTCAGGTGCTTTAAGGCCCTTCATAAGCAATACAGAAATGACTCTCTCAGCCAATGCACTTCAACAACTGGAGGTTTTGCAAAATAACACTGATGGATCTGAGAATGGTTCCTTGCTGCAAATTATGAATCACACTCTCACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTATCACACCCACTGTGTGATCAAACCTTGATTGCTGCTCGTCTTAATGCTGTATCTGAAATCGCAGAGTCCATGGGAACTTGTAATGGTATGAAGAATATTGGATGTTTTGAGGAAGATTCTGATGTTGCAATTGTGCAGCCTGAGTTAGCGCACATACTTTCATTGGTTTTGACATCCCTGGGCCGGGCACCTGATATACAGCGTGGGATTACAAGAATTTTCCATTGCACTGCTACCCCATCTGAGTTTATTGCCATTATTCAAGCTATTTTGTCTGCTGGAAAACGGCTTCAGCAACTTAACATAGGAGAGGGTGATAATAATAACGATAATAAATTGCGATCTGATTTGTTAAAGAAGCTAATTTCAACTGCTTCCTCTGCAAATATTATTGGTAACGCTGCAAAAATGTTGTCATCTTTAAATAAAGACTCTGCTTATCAAGGAGATTGGACAAATATGATCATTGCAACTGAGGAACAATTTCCAGAGGTAATTGCAGCTCGAAAGGCTTTTCAGATGGCTGTGGAACAATTAGATTCGTTGATTAACTTGTACCGCAAACGGCTTGGAATGCGAAATTTGGAATATATGTGTGTTTCTGGTGTAACTCACTTGATAGAGTTATCAACTGACGTGAAAGTGCCTTTAAATTGGGTTAAGGTAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGATGGGTTATCATTAGCGAAAGAGAAGCTTATTGTTGCCTGCCGAGCTGCATGGGATAGCTTTCTGAGGGATTTCAGTAAACATTATGCCGAGTTCCAAGCTTCTGTTCAAGCACTAGCTGCTTTAGATTGTCTACATTCACTTGCCATTCTTTCAAGAAATGAGGGTTATGTCCGCCCTGTTTTTGCAGATGACTACGAGCCCGTTCAGATACAAATTTGCTCTGGTAGACATCCGGTTTTGGAGACTACCTTACAAAATGATTTTGTCCCAAATGATACAAGCATGGATGCTGATAGAGAGTACTGTCAGATTGTCACTGGACCCAATATGGGCGGGAAAAGTTGCTATGTTCGCCAAGTAGCTCTGATCGCTCTCATGGCTCAGGTTGGTTCCTTTGTACCAGCGTCATCAGCAAAACTGCATGTCCTAGACGGGATTTACACCCGAATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAATTGAGTGAGACTTCACACATACTTCATAGATGTACAGGACGTTCACTGGTTATACTCGATGAGCTTGGGAGAGGTACAAGTACACATGACGGCATGGCCATTGCTTATGCAACATTACATTATCTTCTGAAGCAGAAGAAAAGCTTGGTCCTCTTTGTCACTCATTATCCAAAGATTGCCAGTCTAGAAACCGAATTTCCAGGCTCTGTAGCTGCATATCACATGTCACATCTGACCTCACATGATGATGCGAGTAAAAACTCCAACGATCATGAAGATGTCACTTATCTATATAAGCTCGTACCGGGTGTTTCCGAGAGAAGTTTCGGTTTTAAGGTTGCCCAGCTTGCACAGTTACCATCACATTGCATTAGCCGAGCTATTGTCATGGCTTCCAAATTAGAAGCACTAGTAAACAGTAGAATACATGGTAGATCAGGAAAGGAGTTGTTGTTGGATGCACCTGTTATTGATCAAGAGCAAGAACCACACGATTGTCCACGTCAAGAATTTGGTAGAGCATATAAAGAATTCTATTCAAACTTTAAAGCTGCAATCTTAGATGATGATGACCATGCAAAAAGCTTTCAACTTTTAGAGAATGCTAGAAGCATTGCAAAGACATTAGTTAGCAGGTCAATGCAGTTTGTATAG	3273	0.4299	MGKQKQQVISRFFAPKPKIPSSTTDPPPPPPPPPSSSPKITTTVSFSPSKRRLISQLTSSPNKQPKLSPHSNNPVPSPPNPSLHQRFLQKLLEPSNPTPQAPSSSKPVKFTPLEHQVVELKAKYPDVLLMIEVGYKYRFFGQDAENAARVLGIYAHMDHNFLTASIPTVRLNVHVRRLVSAGYKVGVVKQTETAAIKSHGLNRAGPFCRGLSGLYTKATLEAAHDLGGGEDECGTVSNYLLCVVEKSILGEKKLNCGVEGGFDVRIGIVGVEISTGDVVYGEFNDNFLRSELEAVVVSLSPAELLLGDPLSKQTEKLLLAFAGPSSNTRVERASRDCFTNGGAFAEVMTLYENTNVDSPDSMQNNELTEHGSQQMVVKEVMNLPDLAVEALALTIRHLKGFGFERILCSGALRPFISNTEMTLSANALQQLEVLQNNTDGSENGSLLQIMNHTLTIFGSRLLRHWVSHPLCDQTLIAARLNAVSEIAESMGTCNGMKNIGCFEEDSDVAIVQPELAHILSLVLTSLGRAPDIQRGITRIFHCTATPSEFIAIIQAILSAGKRLQQLNIGEGDNNNDNKLRSDLLKKLISTASSANIIGNAAKMLSSLNKDSAYQGDWTNMIIATEEQFPEVIAARKAFQMAVEQLDSLINLYRKRLGMRNLEYMCVSGVTHLIELSTDVKVPLNWVKVNSTKKTIRYHPPEVVTALDGLSLAKEKLIVACRAAWDSFLRDFSKHYAEFQASVQALAALDCLHSLAILSRNEGYVRPVFADDYEPVQIQICSGRHPVLETTLQNDFVPNDTSMDADREYCQIVTGPNMGGKSCYVRQVALIALMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHRCTGRSLVILDELGRGTSTHDGMAIAYATLHYLLKQKKSLVLFVTHYPKIASLETEFPGSVAAYHMSHLTSHDDASKNSNDHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHGRSGKELLLDAPVIDQEQEPHDCPRQEFGRAYKEFYSNFKAAILDDDDHAKSFQLLENARSIAKTLVSRSMQFV*	1091

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mal1g2023	1090	Gene3D	-	423	755	-	-
Mal1g2023	1090	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	89	1081	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Mal1g2023	1090	SUPERFAMILY	DNA repair protein MutS, domain II	266	357	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Mal1g2023	1090	Pfam	MutS domain II	238	338	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Mal1g2023	1090	SMART	DNAend	441	790	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Mal1g2023	1090	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH3	89	1081	-	-
Mal1g2023	1090	MobiDBLite	consensus disorder prediction	39	70	-	-
Mal1g2023	1090	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	888	904	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Mal1g2023	1090	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	763	1008	IPR027417	-
Mal1g2023	1090	Pfam	MutS domain V	810	1008	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Mal1g2023	1090	Gene3D	MutS, connector domain	234	420	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Mal1g2023	1090	MobiDBLite	consensus disorder prediction	1	83	-	-
Mal1g2023	1090	Pfam	MutS domain III	426	755	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Mal1g2023	1090	SUPERFAMILY	DNA repair protein MutS, domain III	425	760	IPR036187	-
Mal1g2023	1090	SUPERFAMILY	DNA repair protein MutS, domain I	105	219	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Mal1g2023	1090	Gene3D	-	605	731	-	-
Mal1g2023	1090	MobiDBLite	consensus disorder prediction	20	38	-	-
Mal1g2023	1090	Gene3D	-	763	1034	IPR027417	-
Mal1g2023	1090	SMART	mutATP5	807	1005	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Mal1g2023	1090	Gene3D	DNA repair protein MutS, domain I	100	227	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Mal1g2023	1090	PIRSF	Msh6	100	1037	IPR017261	GO:0006298\|GO:0030983
Mal1g2023	1090	Pfam	MutS domain I	111	221	IPR007695	GO:0005524\|GO:0006298\|GO:0030983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal1g2023	Mal-Chr1	26560530	26572227	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal1g2023	K08736		-	gmx:100789883	1611.28

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal1g2023	1	26560530	26572227	Mal1g2023	1	26560530	26572227	ECH