Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1654 ATGAATTACGGCCGTTTGATTTCTGGCGGAGGAAGGCTTTTCCGACGACTATGCACGGCTGTGACGGCGGCTGAGCTTCCGAAGAAGAAGCCAAGCCTTTACCAAAGACTAGCGCAGCTGGAAAAGACCGGAAAAACCGTGTCGCAGACGTTGAACGACTATATAATCGAAGGCAAAACCTTAGGAAAAGGTGAACTCATTAAATGCGTCGAGGAGATTCGAAAGTATCGTAGATTCCATCACGCATTCGAGATAATGGAATGGATGAAGATGAGGAACATTAATTTTTCATGGGATAACTATGCAGTGTATTTAGATCTTGTGTCCAAAGTGAAAGGAGTGATTGAAGCTGAGAATCACTTCAACAGTTTTCCTCCTCCTGCTAAGAACATGTACACATATGGTTCACTTCTAAACTGTTATTGCAAGGAACTAATGCTAGACAAGGCTTTGACTCATTTTGATAAAATGGATGAATTAGGTTATGTGACTTGTTTGTCTTTCAACAATTTGATGACTATGTATACGAAGTTAGGTCAACCCCAGAAAGTTCCTCAGTTGGTTAATGCAATGAAGGAGAGGAAAATTCGCATGGCTGAATTTACATACATTGTTTGGATGAATAGTTGTGCTGCTTTGAATGACCTTGGTGGGGTTGAAAGTGTTTATAAGGAGATGAAAAGAGAAGATGAAGACAAAATTGATTGGAAGACTTATAGCAACCTTGCTGCTATCTATATAAATGCTGGACAATTTGAGAAAGCTGAGTGGATGCTTAGAAGGTTGGAAGAAATAATGAAGCCGCGGCAACGCGAAAGTTACCATTGCTTGTTGAGTCTTTATGGTGGTACTGGTAATGTTAAACAGGTTTATAGAGTGTGGAGTAAGCTCAAGAAGGTCTCCCCTGTGACCAATCAAAGCTATTTTTCTATGCTTTCTACACTTCGAAGGCTTAATGATATGGAGGGCATAATAACGGTGTTTAAGGAGTGGGAATCCAGGCATGATGTTAGTTATGATACAAGGTTGGTTGGTGTTGCAGTGTATGCTTACTTGAGTCAAAACATGGATGGTGAAGCTATGTCGATCTTTGAGGAGGCTCTCAAGCGGTGCAGAGGACCTTTCTTTAGGATTCGGGAAATGTTCATGGTGTATTTATTGGAGAAATGCCAATTGAATGGTGCTATGAGCCACTTAGAGGCCGCACTATCAGAAGTCGACGATTATAAATACCGTCCTTCACCAAAAGTTGTGAGTGCTTTTCTAAAGTATTATGAAAAAGAAACAGATCTTAACGGTGTTGATGAGTTAAGCAAGATTCTCAGGAGTCACAATTTTGATGAATCCTGTATTGAAACTTGCATTACTGCATCTAAATCATCTCCTGGTATTCATCCAGTATTGAAGGAGGATTCTTATGTCGACCATGCACACGAGAACTTGTAA 1446 0.4046 MNYGRLISGGGRLFRRLCTAVTAAELPKKKPSLYQRLAQLEKTGKTVSQTLNDYIIEGKTLGKGELIKCVEEIRKYRRFHHAFEIMEWMKMRNINFSWDNYAVYLDLVSKVKGVIEAENHFNSFPPPAKNMYTYGSLLNCYCKELMLDKALTHFDKMDELGYVTCLSFNNLMTMYTKLGQPQKVPQLVNAMKERKIRMAEFTYIVWMNSCAALNDLGGVESVYKEMKREDEDKIDWKTYSNLAAIYINAGQFEKAEWMLRRLEEIMKPRQRESYHCLLSLYGGTGNVKQVYRVWSKLKKVSPVTNQSYFSMLSTLRRLNDMEGIITVFKEWESRHDVSYDTRLVGVAVYAYLSQNMDGEAMSIFEEALKRCRGPFFRIREMFMVYLLEKCQLNGAMSHLEAALSEVDDYKYRPSPKVVSAFLKYYEKETDLNGVDELSKILRSHNFDESCIETCITASKSSPGIHPVLKEDSYVDHAHENL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1654 481 SUPERFAMILY TPR-like 119 369 IPR011990 GO:0005515
Mal1g1654 481 Gene3D Tetratricopeptide repeat domain 63 230 IPR011990 GO:0005515
Mal1g1654 481 PANTHER OS01G0301500 PROTEIN 5 480 - -
Mal1g1654 481 TIGRFAM PPR: pentatricopeptide repeat domain 132 162 IPR002885 -
Mal1g1654 481 Pfam PPR repeat 132 161 IPR002885 -
Mal1g1654 481 Pfam PPR repeat 238 264 IPR002885 -
Mal1g1654 481 Pfam PPR repeat 167 196 IPR002885 -
Mal1g1654 481 Pfam PPR repeat 201 229 IPR002885 -
Mal1g1654 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Mal1g1654 481 PANTHER OS12G0527900 PROTEIN 5 480 - -
Mal1g1654 481 Gene3D Tetratricopeptide repeat domain 241 461 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1654 Mal-Chr1 21664358 21666043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1654 32 442 EF-hand Containing Proteins AT1G02150 34.217 1.96e-73 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1654 - - gmx:100781679 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1654 1 21664358 21666043 Mal1g1654 1 21664358 21666043 ECH
Mal1g1654 1 21664358 21666043 Mal3g4414 3 123689382 123690395 PCT