Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0596 ATGTTGGAAACCCTAGTATTACCCGCAAGCTTTCGCTTCGCAAATCGAATATCTCTTCGCGGAAGCTTGAGCACCGTTCGTGCATTCAATTCCTCCTCCTCTTCAGATTATGGAGATCAGTCTCGTGGTGGCCTCCCTCGCTTCTACTCCGATACTCTTCCTCCTTCCAAGGGTAATGTTATTCGGGTTAAAGGCGATGAATTCTGGCACATGACTAAAGTATTGAGGCTGTCCACCATTGATAGGGTACAGCTCTTCAATGGAAAAGGAGGTTTGGTAGAAGGATGCCTACAGAACATTGACCGCACTGGACTTGATTTTGTTGCATTGACTGATCTGAAGTTAGTGCCTCCGCAGAATTTGCAATTGCATGTATTTTCTGGTTTTGGTACTCTTAAGGGTGGGCGTGCTGACTGGCTTGTAGAGAAGTGTACAGAACTTGGAGCCAGTAGTGTTACTCCACTATTGACTGAACGTTCTCCGTCAATCTCAGAAAATCGGGTGGACAGACTGGAACGTGTCATTTTAGCAGCATCTAAACAATGTCAAAGACTGCATGAAATGATCCTGAAACCTCCTGTAGAGATTGGTGATATTTTGCATCTTATTGCGCAATCAAAGCTATCTCTTGTTGCAACAGCAGAAGCAACTCCTGTTCTTAATGCATTGACGTCACTGGAGAATGAAACTAGTGGCTTAATCATAGTCGGGCCAGAGGGCGATTTCACTGAGAAAGAAGTGAATATGATGATGGAAGCAGGTGCTAAATCTGTTAGTCTTGGGCCTCATCGTCTTCGAGTTGAAACTGCCACAATAGCACTTCTGACTACTGTAATGTTATGGTCTGACTCTCAGCAAACTTCTGTCTCTTGA 873 0.4456 MLETLVLPASFRFANRISLRGSLSTVRAFNSSSSSDYGDQSRGGLPRFYSDTLPPSKGNVIRVKGDEFWHMTKVLRLSTIDRVQLFNGKGGLVEGCLQNIDRTGLDFVALTDLKLVPPQNLQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMILKPPVEIGDILHLIAQSKLSLVATAEATPVLNALTSLENETSGLIIVGPEGDFTEKEVNMMMEAGAKSVSLGPHRLRVETATIALLTTVMLWSDSQQTSVS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0596 290 Gene3D - 44 289 IPR029026 -
Mal1g0596 290 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 45 287 IPR006700 GO:0006364|GO:0008168
Mal1g0596 290 CDD RsmE-like 123 276 IPR046886 -
Mal1g0596 290 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 59 279 IPR006700 GO:0006364|GO:0008168
Mal1g0596 290 Pfam RNA methyltransferase PUA domain 64 108 IPR046887 -
Mal1g0596 290 SUPERFAMILY PUA domain-like 45 105 IPR015947 -
Mal1g0596 290 SUPERFAMILY alpha/beta knot 121 282 IPR029028 -
Mal1g0596 290 Pfam RNA methyltransferase domain 121 278 IPR046886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0596 Mal-Chr1 6851870 6855385 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0596 K09761 - gmx:100777253 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0596 1 6851870 6855385 Mal1g0596 1 6851870 6855385 ECH