Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0229 ATGGAAGTTCAACAGCATGAAGCACTTTCTGAAAACAAAGAGCCGGCTGAAAATGCAAATGCTGAACCTGATGGTGTTTCTTGTAAGAAAAGTAATACCATGCAAATTTATAGACAAGATGTTGTGAAGAATAAAAACAGTGGGATGATTGGGATTGTGACGGAAGTTACTGGTGATTCTGATTCGGACTCGGATTCGGATTCAGATAGCGGACTCACTGTTGATGAGGGTGAGGATGGTAATGTTGAGGAAGGTGATGAAAGTAATAATGGGTGCAGAAATTCTGATAGGAATGATGCTTCTGTGCACCGTAAGACTGCTGTTCTTCAGACTAATGAGCTACGTGTACTTTGGATGGATGAATCTGAATCCACACAGAATTTCAGTGATGTAGAAGTTGTTGACCGTGGATTTTTACATAGTGATTTTGTAGCTGCTGCCTCTGATCCTACTGGGCAAGTGGGTGTTGTGGTTGATGTCAATATATCTGTGGATTTGTTGGCCCATGATGGATCTATTGTAAAAGATATCTCATCTAAAGACTTAAAGCGTATTAGGGATTTCACTGCTGGTGATTACGTGGTGCTCGGGTCGTGGTTAGGAAAAGTTGATGATGTTTTGGATAATGTGACTGTCTTATTTGATGACGGTTCAGTTTGTAAAGTCTCCAAAGCAGATCCGATGGATCTTAAACCGATTTCGAAGAACAGTATACTTGAAGATGGACATTTCCCTTATTACCCAGGGCAACGTGTAAGGGCCAAGTCTTCATCAATCTTCAAGATGGCTAGATGGTTGTCTGGCTTGTGGAAAGCAAATAGGTTAGAAGGTACTGTTACCAATGTTACAGTTGGATCAGTGTTTGTTTATTGGATAGCATCTGCAGGTCATGGTCCATATTCTTCTGCTGCCCCAGCTGAGGAACAGAGTCCAAAAAACTTAAAATTGCTGTCTTGTTTTGCTCATGCAAATTGGCAAGTGGGTGACCGGTGTCTTTTACCCTCATCTGCACTGTCATCTTCTGTTTCCATCAACAAAAACAAATCAAAATTGGAACATAACGATTCTGTTAACATTGAATTAGATTCTAATCAAACAGGAAGTGGGTGTGATTCAGAAGACGCTACAGTTGAGGAATCAAATGGGAACAAAGATGCTATGGACCTTGATCCAGTGAGTGCTTTGGAAGGGAATGATGGAAATGATAGAAATAATCCTTCATGCGAATCTAGCTCATGTGGTAGTTCTATCTCAGTATCAAAGGACCCTGTCCGTGAAGCTTGGCCTCTTCACCGCAAGAAAATAAGGAAAGTTGTCATCAGGAAAGAAAAGAGAGCCCGGAAGAAAGAGGAAAGCTTTGAAAAAGCTCTTCAAATTGCCAACACTAGGACAAGAGTTGATGTTGCTTGGCAGGATGGAACGATAGAGCGTGGACTAGATTCTACAAGTTTAATTCCTATTGATACTCCTGGTGATCATGAGTTTGTTTCAGAACAATATGTTGTAGAAAAGACCTCTGATGACGGTGAGGATAATTGTGAAACTAGCCGAGTTGGGGTGGTGAGGAGTGTTGATGCCAAAGAGCGGACAGCTTGTGTGAGGTGGATAAAACCAGCTGCCAAGGCAGATGATCCCCGAGAATTCGACAACGAGGAAATTGTAAGTGTCTACGAGCTAGAGGGCCATCCAGATTATGAGTACTGCTATGGGGATGTGGTTGTTAGACTGTCACCTGTGTCTGTCTGTTTAGAAGCTTCTGTTGGAGAGTCTACTGAGAAATCGAAGCAGGAAAAGGAAGAAAGTGGACATAAAAAGGAAGCAGCAACCCAAACAGAAAATGCATTTGCTGGCGAAACTGATGTGGAGTTTTCAGACCTCTCGTGGGTTGGAAATATAACTGGCCTTAAGAATGGTGATATTGAAGTTACTTGGGCTGATGGGATGGTATCAACGGTTGGACCCCAAGCAATCTATGTGGTTGGTAGAGATGATGATGCTGAATCACTTGCGGCAGGGAGCGATATAAGTGATGCTGCAACCTGGGAAACCGTTAATGATGATGAAATGGAAGTCCTAGAGGATTCCAGAGAGGATGTTAATAGGGAAAATTCAAGCAATGTTACTTATGAAGCAGAAGAGAGTGGAGAGAAAGACTCTGGTAGGGCTGCAGCACTTTCTGTCCCACTAGCAGCAATTCGATTCGTAACCAGACTTGCGTCTGGAATATTCTCCAGGGGACAAAAGAACTTGGATCCTGTTCACGTGCAGTCAAATGATGAAATTGAATGTTCGTCACCAGTTAAAATTTGTGAGTCCAGTTCTCAGGAAAGTATTGCCATTGATGGTGACAATTTGGGCAGAAAGAGTTGTAAAAATGAGGAGTCTGTTACTCCAGAATGTTCAGAAAATGTGGAAACATCTGAGGCACTGTGCTTGAAGAATGAAGAGGCTCCTGCCAGTTGTGACAATGATGCTTGTAGTTTGAAACATTTCGACATGGTTACAGATCCGTCAGACCATTACTATATTGGTGCAAATGGACAGAGGAACAACCGAAAATGGTATAAGAAGGTGCAACAAGATTGGGGCATACTACAAAATAACCTTCCTGAGGAAATCTATGTACGAGTTTACGAAGATAGAATGGATCTTGTGAGAGCAGTTATTATAGGGCCATTTGGGACTCCTTACCAAGATGGGCTGTTTTTCTTTGATTTTCACCTTCCGCCAGATTATCCTGATGTTCCACCGTCAGCATACTATCATTCAGGTGGTTGGCGTATTAACCCTAATTTGTATGAGGAAGGGAAGGTTTGCCTTAGCCTTCTAAATACATGGACAGGCAGAGGCAATGAAGTATGGGATCCAAAATCGTCTAGCATCCTTCAAGTTCTAGTTTCACTTCAAGGGCTAGTACTCAACTCCAAGCCTTACTTCAATGAAGCCGGATATGATAAGCAGACTGGAACAGCTGAAGGAGAGAAGAATTCGTTATCATACAATGAGAATACATTTTTACTGAACTGCAAGACCATGATGTATCTTATGCGGAAGCCCCCCAAGGATTTTGAAGTGCTCATCAAAGAACATTTTAGGAGGCGTGGTCATTACATTCTTAAGGCCTGTGATGCATATATGAAAGGCTACTTGATTGGCTCGTTGACTAGAGATGCCTCCGTGAGTGACAATAGCAGTCCGAATTCAACCTCTGTTGGTTTCAAGTTGATGTTGGCCAAGATAGTGCCAAAGCTTTTCTTGTCACTTAGTGAAGTTGGAGCTGATTGCGAGGAATTTAAGCATTTGAAAGAGTTGTAG 3315 0.4223 MEVQQHEALSENKEPAENANAEPDGVSCKKSNTMQIYRQDVVKNKNSGMIGIVTEVTGDSDSDSDSDSDSGLTVDEGEDGNVEEGDESNNGCRNSDRNDASVHRKTAVLQTNELRVLWMDESESTQNFSDVEVVDRGFLHSDFVAAASDPTGQVGVVVDVNISVDLLAHDGSIVKDISSKDLKRIRDFTAGDYVVLGSWLGKVDDVLDNVTVLFDDGSVCKVSKADPMDLKPISKNSILEDGHFPYYPGQRVRAKSSSIFKMARWLSGLWKANRLEGTVTNVTVGSVFVYWIASAGHGPYSSAAPAEEQSPKNLKLLSCFAHANWQVGDRCLLPSSALSSSVSINKNKSKLEHNDSVNIELDSNQTGSGCDSEDATVEESNGNKDAMDLDPVSALEGNDGNDRNNPSCESSSCGSSISVSKDPVREAWPLHRKKIRKVVIRKEKRARKKEESFEKALQIANTRTRVDVAWQDGTIERGLDSTSLIPIDTPGDHEFVSEQYVVEKTSDDGEDNCETSRVGVVRSVDAKERTACVRWIKPAAKADDPREFDNEEIVSVYELEGHPDYEYCYGDVVVRLSPVSVCLEASVGESTEKSKQEKEESGHKKEAATQTENAFAGETDVEFSDLSWVGNITGLKNGDIEVTWADGMVSTVGPQAIYVVGRDDDAESLAAGSDISDAATWETVNDDEMEVLEDSREDVNRENSSNVTYEAEESGEKDSGRAAALSVPLAAIRFVTRLASGIFSRGQKNLDPVHVQSNDEIECSSPVKICESSSQESIAIDGDNLGRKSCKNEESVTPECSENVETSEALCLKNEEAPASCDNDACSLKHFDMVTDPSDHYYIGANGQRNNRKWYKKVQQDWGILQNNLPEEIYVRVYEDRMDLVRAVIIGPFGTPYQDGLFFFDFHLPPDYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQTGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFEVLIKEHFRRRGHYILKACDAYMKGYLIGSLTRDASVSDNSSPNSTSVGFKLMLAKIVPKLFLSLSEVGADCEEFKHLKEL* 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0229 1104 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 853 1013 IPR000608 -
Mal1g0229 1104 SMART ubc_7 856 1013 - -
Mal1g0229 1104 MobiDBLite consensus disorder prediction 89 103 - -
Mal1g0229 1104 MobiDBLite consensus disorder prediction 398 419 - -
Mal1g0229 1104 MobiDBLite consensus disorder prediction 355 419 - -
Mal1g0229 1104 CDD UBCc 855 1006 IPR000608 -
Mal1g0229 1104 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 4 1102 - -
Mal1g0229 1104 Pfam Ubiquitin-conjugating enzyme 859 1001 IPR000608 -
Mal1g0229 1104 MobiDBLite consensus disorder prediction 1 33 - -
Mal1g0229 1104 MobiDBLite consensus disorder prediction 47 105 - -
Mal1g0229 1104 Gene3D Ubiquitin Conjugating Enzyme 822 1083 IPR016135 -
Mal1g0229 1104 MobiDBLite consensus disorder prediction 590 607 - -
Mal1g0229 1104 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 4 1102 - -
Mal1g0229 1104 MobiDBLite consensus disorder prediction 587 609 - -
Mal1g0229 1104 MobiDBLite consensus disorder prediction 358 376 - -
Mal1g0229 1104 MobiDBLite consensus disorder prediction 693 718 - -
Mal1g0229 1104 MobiDBLite consensus disorder prediction 60 85 - -
Mal1g0229 1104 SUPERFAMILY UBC-like 835 1020 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0229 Mal-Chr1 2572756 2578903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0229 135 337 Miscellaneous Gene Families AT2G33770 39.216 2.75e-43 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0229 K10581 - gmx:100809513 1666.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0229 1 2572756 2578903 Mal1g0229 1 2572756 2578903 ECH