Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3199 ATGAGGTCCCTAATCCCACACCATGTGATGATGATCTTAGCCATTTTCTTCTTCATGTCCTGCACCATTTCCCTAGCCCATGAAGTCTGCTCCCCAAAAGAGTTCCTTGACGTGCACAACCAAGCTCGCGCCGAGGTTGGTGTGGGTCCACTCTCATGGAACCACAACCTTGAAGCCTACGCTCAGAACTACGCTGACTTGAGGAGCCATGACTGCAACCTCGAGCACTCTAACGGGCCGTATGGTGAGAATATCGCTGAGGGTTACGGCGAAATGAAGGATGCAGATGCGGCAAAGCTCTGGTTCGCCGAAAAGCCCAACTACGACCCTCAGTCCAACTCGTGTGTCAATGATGAATGCTTGCATTATACACAGATGGTTTGGCGCGATTCTGTTCATCTTGGGTGTGCTAAGTCCAAATGCAACAATGGCTGGGTTTTTGTTGTTTGCAACTATGACCCACCAGGCAACTATGTTGGAGATAGACCTTATTGA 495 0.497 MRSLIPHHVMMILAIFFFMSCTISLAHEVCSPKEFLDVHNQARAEVGVGPLSWNHNLEAYAQNYADLRSHDCNLEHSNGPYGENIAEGYGEMKDADAAKLWFAEKPNYDPQSNSCVNDECLHYTQMVWRDSVHLGCAKSKCNNGWVFVVCNYDPPGNYVGDRPY* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3199 164 CDD CAP_PR-1 32 164 - -
Lja6g3199 164 ProSitePatterns CRISP family signature 2. 147 158 IPR018244 GO:0005576
Lja6g3199 164 PANTHER - 9 164 - -
Lja6g3199 164 Pfam Cysteine-rich secretory protein family 36 152 IPR014044 -
Lja6g3199 164 SMART SCP_3 30 160 IPR014044 -
Lja6g3199 164 SUPERFAMILY PR-1-like 33 164 IPR035940 -
Lja6g3199 164 Gene3D CAP 30 164 IPR035940 -
Lja6g3199 164 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Lja6g3199 164 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 9 164 IPR001283 -
Lja6g3199 164 PRINTS Allergen V5/Tpx-1 family signature 51 69 IPR001283 -
Lja6g3199 164 PRINTS Allergen V5/Tpx-1 family signature 97 110 IPR001283 -
Lja6g3199 164 PRINTS Allergen V5/Tpx-1 family signature 120 136 IPR001283 -
Lja6g3199 164 PRINTS Allergen V5/Tpx-1 family signature 147 160 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3199 Lja-Chr6 60417200 60418079 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3199 K13449 - gmx:100527778 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3199 6 60417200 60418079 Lja6g3199 6 60417200 60418079 ECH