Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3198 ATGGGATTTTCCAAGGTTACACTTTCTCTAATAATGTGTGTCTTGTGCTTGGGACATTATGTTGTCTATGGCCAAGACTCACGTGCAGACTACCTCAATGCACACAACGCTGCAAGGTCAGCAGTGAATGTTCCAAATCTTGTTTGGGATGACACCGTAGCTGCTTTTGCACAGAACTATGCCAATCAACGTAAGGGAGACTGCAAACTGGTCCACTCAGGTGGCGGTGGACGTTACGGGGAGAACCTGGCGTGGGGAAAACCTGACCTAAGTGGCACAGGGGCAGTGAAATTGTGGGTGGATGAGAAAGCAAACTATGACTACAATTCTAATTCTTGTGCTAGTGGAAAACAGTGCGGGCATTACACTCAGGTGGTTTGGAAAAACTCCATGCGCCTTGGATGTGCTAAGGTAAAATGTGATAATGGAGGAGGCACGTTTATTACTTGCAACTATGACCCTCCAGGCAACTATGTTGGCCAAAAACCCTACTAA 495 0.4667 MGFSKVTLSLIMCVLCLGHYVVYGQDSRADYLNAHNAARSAVNVPNLVWDDTVAAFAQNYANQRKGDCKLVHSGGGGRYGENLAWGKPDLSGTGAVKLWVDEKANYDYNSNSCASGKQCGHYTQVVWKNSMRLGCAKVKCDNGGGTFITCNYDPPGNYVGQKPY* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3198 164 CDD CAP_PR-1 29 164 - -
Lja6g3198 164 ProSitePatterns CRISP family signature 2. 147 158 IPR018244 GO:0005576
Lja6g3198 164 PRINTS Venom allergen 5 signature 47 65 IPR002413 -
Lja6g3198 164 PRINTS Venom allergen 5 signature 93 108 IPR002413 -
Lja6g3198 164 PRINTS Venom allergen 5 signature 118 137 IPR002413 -
Lja6g3198 164 SUPERFAMILY PR-1-like 12 164 IPR035940 -
Lja6g3198 164 ProSitePatterns CRISP family signature 1. 120 130 IPR018244 GO:0005576
Lja6g3198 164 Gene3D CAP 26 164 IPR035940 -
Lja6g3198 164 PANTHER PATHOGENESIS-RELATED PROTEIN 1B-LIKE 2 164 - -
Lja6g3198 164 SMART SCP_3 26 160 IPR014044 -
Lja6g3198 164 Pfam Cysteine-rich secretory protein family 32 152 IPR014044 -
Lja6g3198 164 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 2 164 IPR001283 -
Lja6g3198 164 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Lja6g3198 164 PRINTS Allergen V5/Tpx-1 family signature 95 108 IPR001283 -
Lja6g3198 164 PRINTS Allergen V5/Tpx-1 family signature 119 135 IPR001283 -
Lja6g3198 164 PRINTS Allergen V5/Tpx-1 family signature 147 160 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3198 Lja-Chr6 60413129 60413939 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3198 K13449 - zju:107427101 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3198 6 60413129 60413939 Lja6g3198 6 60413129 60413939 ECH