Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3196 ATGGGGGTGCCAAATATCTCAACATTGCTTCCTCTCATAGCTATCCTAGCCATTGTGACATTTTCACAAACAGGTTATGCTCAAGACTCACCTGCAGACTACCTTGAAGCTCAGAACAGATTCCGTTCCTATGCTGGGGTTGCTCCTTTGGTATGGGATCAAAACCTTGCCAATTATGGAAAAAACTATCTGAATAGATTCAGGGGAAGCTGCGAGATGGAACACTCACAGGGTGGTCCTTATACCGAGAACCTTGCATGGGGGTTTCCTGACTTGACAGGCACTGCTGCTGTGGATATGTGGGTGAATGAGTGGCCACATTATGACTATAACTCCAACTCTTGTATTGGTGGTGAGTGCAGGCACTACACTCAGGTGGTGTGGCGCGACACGCTTCGTGTCGGGTGTGCCAAGGTCAGGTGCGACAATAATCGCGGCACACTCATCAGCTGCACCTATGATCCCAAAGGGAACTATATTGGTCAGAGACCTTTTGATATTAGTCCCTTTGAAGTTCCCTTGAGCTTCAAGCATCATGATAAGGAAGTGGTTGTTGAGAAGAACTAA 567 0.4727 MGVPNISTLLPLIAILAIVTFSQTGYAQDSPADYLEAQNRFRSYAGVAPLVWDQNLANYGKNYLNRFRGSCEMEHSQGGPYTENLAWGFPDLTGTAAVDMWVNEWPHYDYNSNSCIGGECRHYTQVVWRDTLRVGCAKVRCDNNRGTLISCTYDPKGNYIGQRPFDISPFEVPLSFKHHDKEVVVEKN* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3196 188 ProSitePatterns CRISP family signature 1. 121 131 IPR018244 GO:0005576
Lja6g3196 188 SUPERFAMILY PR-1-like 29 166 IPR035940 -
Lja6g3196 188 Pfam Cysteine-rich secretory protein family 35 153 IPR014044 -
Lja6g3196 188 Gene3D CAP 26 169 IPR035940 -
Lja6g3196 188 PRINTS Allergen V5/Tpx-1 family signature 97 110 IPR001283 -
Lja6g3196 188 PRINTS Allergen V5/Tpx-1 family signature 120 136 IPR001283 -
Lja6g3196 188 PRINTS Allergen V5/Tpx-1 family signature 148 161 IPR001283 -
Lja6g3196 188 PRINTS Allergen V5/Tpx-1 family signature 50 68 IPR001283 -
Lja6g3196 188 CDD CAP_PR-1 31 165 - -
Lja6g3196 188 PANTHER PATHOGENESIS-RELATED PROTEIN 1 21 165 - -
Lja6g3196 188 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 21 165 IPR001283 -
Lja6g3196 188 SMART SCP_3 29 161 IPR014044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3196 Lja-Chr6 60393976 60394737 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3196 K13449 - jre:109020655 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3196 6 60393976 60394737 Lja6g3196 6 60393976 60394737 ECH