Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2765 ATGGAATTGGAACCTCCAACCTCTCCCCCAATTCAAACTGGCATCGTTTTGGATCATCCTCCACCACCACCACCACCGTTTTCTGTATTTCACCACCGTTTTCTACCACCACCGTCCCGGGCATTTCTTCCATTTCCTCTGAACCCATCATTTTTCTTTGCAATGGATAGCCAGAGGTCTATATCTCTCCTTCAGTTCATGGCTGATGAAGGGCTTGTTCCATCACCAGAAGAGGAAGAGAAAAGGAAAAACGCTATTCAAAAGCTCAAACAGATAGTCTCATCATGGATCAAGAAGGTTGCATGGCAGCATCGACTACCGAAGCACCAGATTGCTGTTACATCTGCTACCATATTGACATATGGATCTTATGGCCTTGGAGTTCACAGCTCAGAGTCTGATATTGATGCTTTATGTGTTGCTCCTTTCTATGCATCCATTGCAGAAGACTTTTTTGTTGTGTTGCATCACATGCTTAAGAGGAGACCTGAAGTATCAGAGATCCTTTGTGTCAAGAGCGCAAAAGTCCCTCTTATCCGATTTAAATTTGATGGGATTTCCATTGATCTTCCATACGCTCGGCTTAAAGTACTATATGTTCCTGAGAATGTTGACATACTAAATCCATTCTTCATGAGGAATATTGACGACACTAGCTGGAAAAGCTTGTCTGGTGTACGAGCAAATAAACGCATTCTGCAACTAGTTCCAAATGTTGAGAATTTTCAATCTGTGCTACGGTGTCTTAAATTATGGGCAAAAAGACGAGGAGTGTATGGAACTTTACTTGGTTATTTGGGAGGAGTTCATTTGGCAGTTCTTGTAGCTTATGTTTGTCAAAGACACCCTGATGCCACCTTAAATGGTCTAATTGCGAACTTTTTTCGAACATTTGCATTTTGGCCTTGGCCTACACCAGTGATGCTGCAGGAAGGAATGTTACCAACAGTTGTAGATGCTATAGAAACACGATCCTTCATGCCTATTCTGTTGCCATCTAGCCCTTACGAGTATTGTCATTCAAATATAACTAAAAGCACATTCTACAGGATCAGAGCTGAGTTTCTACGGGGACATAATATAACAAGGGATCTTTCAAAACCAGATTTCATTTGGGATATTGTATTCGAGCTTTTTCCATACTCAAAAAGATATACACAATTTGTCAAGATTTACCTCTCTACTCCCGATCAACGTGCGCTTGGAGACTGGGTTGGATGGGTGAAGTCACGCTTCCGCGGTCTTCTTGGCATTTTGGAGGGGGTTCAAGGTTTTTGTGACCCTAACCCTACAGAATATGTTGACACTAATAAAACGGAGCCAAATGTGGTTTTCTATTGGGGCTTGCAACATGACAAGTATAACTTAGTGGACATAGATTTGGTTGAGGGAGAGTTCATGAAGATTATCAACAATGGCTATGAAGGTTCTCTTGGAAAAATGGAGTTGTCCATCCTGTTAGCTTCTCAACTGCCTAAGAATTCTCAATTTGATGAAAGGTCTGTTAAGGGTAGAAAAACATGTTGGAGGATAATTGATTATGATAAGAAAAGGAGCCATGTCTACTCTAACCATCTTCCACATTGCCTTATTGGCCATGTGACACCTAGTAGCGAGGCTGAATGCCTGAGTTCTGGTAGCTAG 1644 0.4173 MELEPPTSPPIQTGIVLDHPPPPPPPFSVFHHRFLPPPSRAFLPFPLNPSFFFAMDSQRSISLLQFMADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGLGVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVPLIRFKFDGISIDLPYARLKVLYVPENVDILNPFFMRNIDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRGVYGTLLGYLGGVHLAVLVAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVMLQEGMLPTVVDAIETRSFMPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYTQFVKIYLSTPDQRALGDWVGWVKSRFRGLLGILEGVQGFCDPNPTEYVDTNKTEPNVVFYWGLQHDKYNLVDIDLVEGEFMKIINNGYEGSLGKMELSILLASQLPKNSQFDERSVKGRKTCWRIIDYDKKRSHVYSNHLPHCLIGHVTPSSEAECLSSGS* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2765 547 CDD NT_PAP_TUTase 81 195 - -
Lja6g2765 547 SUPERFAMILY Nucleotidyltransferase 46 233 IPR043519 -
Lja6g2765 547 PANTHER NUCLEAR POLY(A) POLYMERASE 3 45 537 - -
Lja6g2765 547 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 379 492 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lja6g2765 547 Gene3D - 55 376 - -
Lja6g2765 547 SUPERFAMILY PAP/OAS1 substrate-binding domain 237 377 - -
Lja6g2765 547 Gene3D Poly(A) polymerase predicted RNA binding domain 381 486 - -
Lja6g2765 547 Gene3D Beta Polymerase, domain 2 74 230 IPR043519 -
Lja6g2765 547 PANTHER POLY A POLYMERASE 45 537 - -
Lja6g2765 547 Pfam Poly(A) polymerase central domain 56 377 IPR007012 GO:0004652|GO:0043631
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2765 Lja-Chr6 56758551 56763653 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2765 K14376 - jre:109010780 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2765 6 56758551 56763653 Lja6g2765 6 56758551 56763653 ECH