Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2761 ATGGAGGCACTGTTTCAGGGTTCATGTCTTGCTCCTTCTTATCCTCTACTCGAGCTTCCAAAATCCACCACCATGTTAACCAACTGCGTCAAGTTCAATCTCAGTCACAACCCATGCTTCATCTTCGCAAATTCTTCACGGCCATTTTCTGCTCAGAGTAAGCCCAGAAAACCATTTTCAGTCATCGTGAATGCCCAGAAGAAGGACAAGAAAGAAGATCACCATAGCTTCGTATCCAAACCTGATGAGTCTGCTGGTTTCTTCCCTGAAGCTGTGCTTCTTAAAAAGAAAATAGTTGAGGAAGATGGTGAGTTTCTCCCGGAGTTCGAAGATGCTGAAGAAAGAAAACTATTTGAATCGTTGATGCTTGAAATGGACAGTGATCTGAACGTTGAATTATTGCGCCACTACGAGATTGTTTACTTGATTCATGAGAAGCATGAAGAAGAGGTTGCAGCAGTCAATGAGAAAATTCAAGACTTTTTGAGGGAGAAGAAAGGCACGGTGTGGAGATTCAGTGATTGGGGTATGAGAACGCTGGCTTATAAGATAAAGAAAGCTAATAAGGCTCACTACATTTTGATGAACATTGAGATGGATGCTAAATACATCAACGAGTTCAAGACTTTGTTGGACCAAGATGAAAGAGTTATTCGGCATCTCGTGGTAAAGAGGGATGAGGCAATCACTGAAGATTGCCCTCCTCCACCCGAGTTTCATACTCTGGGTGCAAGTGTGGACGATGACGACGACGAAGAACTTGATGAAGATTATGATGATGATTGGGATGGTGAAGAGGATGCGGATGGTGAAGATGGCGATGCTGAATTTATCGTCATAGACGATGACCAAGATGATGTGGATTCTGGAAATGAAACATTGGCAAACAGCACAGTGAAGGGGTTCCCAAGGCCTTTGCTGAATCTAAGCAAGGCATCATTTGCCGAAATAATGGACAGTGCCTTTGGGAAACCTCTAAGCCCTCCTTTTGATCCCTATGCCAATTCCATCAACTATCTTCTTGCATCCTATGTCATTCCTTATGTTGGTCTCACTGGTTATGTTGGAGCCAATCCACTCCTGCAAAATGCTACTTCCAAGAAGCTTGTTGCAGGCCTTCTGGGAGTAGAATCAGGTCAAGATGCAGTCATTAGAGCATTGTTATATGAACGTCGAGCTTTAAAGGTGCATCCTTATGGAAATTCAGTGGCAAAGTTTACAAATCGCATTTCAACACTTAGGAATAAGTTGGGAGGCTCAGGTTTGAAAGATGAGGGTCTTAAAGTCCCTAAATTGCAAGGTGCTGAGGGAGAAACCGAAGGCAACATTCTTGCTGGTGACAAATATTCAATGGCATATGCGAGGAGTCCTGAAGAAATATTGAGGATAGTATATGGTGGAGGTGATGAACATGTCCCTGGTGGCTTCTATCCTAAAGGAGCAAAAGGCCGTATAGCCACATCTTACTTACATAGTAACTAG 1482 0.4318 MEALFQGSCLAPSYPLLELPKSTTMLTNCVKFNLSHNPCFIFANSSRPFSAQSKPRKPFSVIVNAQKKDKKEDHHSFVSKPDESAGFFPEAVLLKKKIVEEDGEFLPEFEDAEERKLFESLMLEMDSDLNVELLRHYEIVYLIHEKHEEEVAAVNEKIQDFLREKKGTVWRFSDWGMRTLAYKIKKANKAHYILMNIEMDAKYINEFKTLLDQDERVIRHLVVKRDEAITEDCPPPPEFHTLGASVDDDDDEELDEDYDDDWDGEEDADGEDGDAEFIVIDDDQDDVDSGNETLANSTVKGFPRPLLNLSKASFAEIMDSAFGKPLSPPFDPYANSINYLLASYVIPYVGLTGYVGANPLLQNATSKKLVAGLLGVESGQDAVIRALLYERRALKVHPYGNSVAKFTNRISTLRNKLGGSGLKDEGLKVPKLQGAEGETEGNILAGDKYSMAYARSPEEILRIVYGGGDEHVPGGFYPKGAKGRIATSYLHSN* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2761 493 TIGRFAM S6: ribosomal protein bS6 135 226 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja6g2761 493 Coils Coil 144 164 - -
Lja6g2761 493 Pfam Ribosomal protein S6 136 224 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja6g2761 493 MobiDBLite consensus disorder prediction 245 273 - -
Lja6g2761 493 CDD bS6 136 225 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja6g2761 493 Pfam Ferritin-like domain 291 390 - -
Lja6g2761 493 Hamap 30S ribosomal protein S6 [rpsF]. 134 227 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja6g2761 493 SUPERFAMILY Ribosomal protein S6 134 234 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja6g2761 493 PANTHER DESICCATION-LIKE PROTEIN 296 490 - -
Lja6g2761 493 MobiDBLite consensus disorder prediction 230 273 - -
Lja6g2761 493 Gene3D - 130 232 IPR014717 -
Lja6g2761 493 PANTHER DESICCATION-LIKE PROTEIN 296 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2761 Lja-Chr6 56717558 56725552 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2761 - - gmx:100790128 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2761 6 56717558 56725552 Lja6g2761 6 56717558 56725552 ECH