Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2752 ATGGTGAAGGTACGGATGAACACGGCGGATGTCGCCGCCGAGGTGAAGTGCCTGAGAAGGCTAATCGGAATGCGATGCTCAAACGTCTATGATCTCACTCCCAAGACCTACGTTTTCAAGCTCATGAACAGTAGCGGAGTCACCGAATCCGGTGAGAGCGAGAAGGTTCTTCTCCTCATCGAAAGTGGTGCTAGATTGCATACTACTATCTATATGCGTGATAAGAGCAACACCCCTTCTGGTTTTACTCTCAAATTGAGGAAGCATATTCGTACTAGAAGGCTTGAGGATGTGCGTCAACTTGGGTATGATCGGATTATTGTGTTTCAATTTGGACTGGGTGAGAATGCAAACTATGTTATATTGGAGCTATACGCGCAAGGGAACATCCTCCTCACGGATTCTAATTTTGTTGTCATGACTCTACTTCGATCTCACAGGGATGATGATAAGGGGCTTGCAATCATGTCTCGCCATCGTTATCCTACAGAAAGTTGTCGAGTTTTTGAGCGGACTACTGTTGAGAAGTTGCTGACAGCCCTAACGTCTTCTAAGGAAGATGACGCTGATGAGGCTGTTAAGGTCGATGCGAATGGATCTGACCTTTCTAGTGTAGCAAAAGAGAAGCAGGGAGCCCGCAAAGGTGGGAAGTCATCTGCCACATTGAAAACTGTCCTTGGGGAGGCACTTGGTTATGGACCTGCACTTTCTGAACATATGATATTAGATGCTGGCTTAATTCCCACTGCAAAAGTTCCCAAAGATAAAACGTGGGACGATGCCACCATTCAGGCTTTGGTCCAAGCTGTTGCAAAGTTTGAAGATTGGATGCAGGACATTATTTCAGGTGAAATAGTTCCAGAAGGTTACATTTTGATGCAGAACAGAAATTTGGGGAAGGATTCTTCCATATCTCAATCAGAAAGTGTTAGCCAGATCTATGATGAGTTCTGCCCCATCTTACTCAACCAGTTTAAGTCAAGGGATCATACAAAATTTGAGACATTTGATGCAGCCTTGGATGAGTTCTATAGCAAAATTGAGAGTCAAAGGTCTGAACAACAGCAGAAAGCCAAAGAAAACTCAGCTGCTAATAAACTTAATAAGATACGTAATGATCAGGAAAACCGAGTGCACGCGTTGAGGAAAGAAGCTGATCATTGTGTTAAAATGGCAGAATTGATAGAATACAACTTAGAAGATGTGGATGCTGCTATATTAGCTGTTCGTGTAGCTCTTGCAAAGGGTATGAACTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCTGGAAACCCAGTAGCTGGTCTCATTGACAAGCTCCATCTTGATAGAAATTGCATGACTTTGCTGTTAGCCAACAATCTTGATGAAATGGATGATGATGAGAAGACACTCCCTGTGGATAAGGTCGAAGTTGATTTAGCTCTCTCAGCACATGCCAATGCTCGGAGGTGGTATGAACAGAAGAAAAAGCAGGAGAGCAAACAGGAAAAGACTATAACTGCCCATGAAAAGGCTTTTAAAGCTGCAGAGAGAAAGACGCGTCTACAACTTAGTCAGGAAAAAACTGTTGCCACAATTTCACATATGCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGGTTATCAGCGGATGTGATGCTCAGCAAAATGAGATGATAGTGAAGCGTTATATGTCAAAAGGAGATCTGTATGTACATGCTGATCTGCATGGAGCTTCTAGTACAGTTATCAAGAATCACAAGCCTGAGCAACCGGTTCCACCTCTCACCCTAAACCAAACAGGATGTTTTACAGTCTGTCATAGCCAGGCATGGGACTCAAAAATTGTTACTAGTGCCTGGTGGGTCTATCCTCATCAGGTTAGTAAAACTGCTCCTACAGGGGAATATCTGACAGTAGGTAGTTTCATGATCCGGGGAAAGAAAAATTTTCTTCCACCACACCCTCTTATCATGGGTTTTGGCTTGCTATTTCGCTTGGATGAAAGTTCCTTGGGATCACATTTAAATGAAAGGAGAGTAAGAGGAGAGGAGGAAACAATAGATGATCATGTAGAAGCTGACCCTCTTGAAGAAATTTCTGATTCAGAGTCTGAGAAGGATACCGCTGATGGAAAATCTGCCGGAGGCTCAGAAAGAAATGATAATTTATCTGTGGATTCACACAAATCCCCATCAGAAGTTTTTCATGCAGACTCATCTCAAGCTAGTTTGGCTACAGTTAATACTGAAACAGAAGTTTCACGTGATTTTCCTGTGAAAGAGACAATTACAACAAATATAGGTGACGGGGAGGAATTGTCTGACATTAGTGGAAATGGCTTAACATCTGTCACTCCTCAACTTGAGGAACTCATTGATCGAGCTCTTGGACTTGGATCTGTTGCTAAATCAAGTACAAATTATGGAGTTGAGAACTCTCAGATTGATTCAGGCAGTGAGCAGCATTTTGAACAGAACAAACCTTCTGTAAGGGATAAACCATATATATCAAAAGCTGAGAGAAGAAAGGTTAAAAAAGAACAGAAATATGGAGAAGCAGATTCAAGTGTTGAACATGGAAAGGATGAACCAAAACTAAAAGATATTTCTGCTAATCTACCTGAAAAAGAAGTTCAAAATTTGAACACATGTGGTGGTAAAAAAACCAGCCGTGGACAGCGGGGCAAGCTTAAAAAGATAAAAGAGAAGTATGCTGACCAGGATGAGGAAGAAAGGCGCATTCGAATGACATTATTGGCTTCTTCTGGAAAAGCAATCAAGAAGGAAGAGACATCATCTGGAAACGAAGCATTGGACAAAGGGAAAAAACCTAGCACTGGTCCTTCAGATGCTCCAAAAATATGTTACAAGTGTAAGAAAGTAGGTCACCTGTCTCGGGATTGTAAGGAGAAACTGTTACCTGGTCATGCAATAGATGAAGCTGAACAAAATCCCAACATGAGTGCTTCTACTACTTCCCCAGCAGATAGGGTGGCAATGGAAGAAGATGATATTAATGAAATAGGAGAAGAAGAGAAAGAAAAACTAAATGACGTGGATTACTTGACAGGGATACCACTCCCTAATGACATTCTCTTGTATGCTGTCCCTGTTTGTGCTCCATACAATGCAGTTCAGTCTTACAAATACCGGGTGAAGATAATTCCTGGAACAGTGAAGAAAGGGAAAGCTGCAAAAACTGCAATGAACCTATTCAGCCACATGCCAGATGCAACAAACCGAGAGAAGGAGTTGATGAAAGCATGTACAGATCCTGAACTTGTTGCTGCACTTGTTGGTAATGTTAAGATATCAGCAGCTGGTCTTACTCAACTGAAGCAAAAGCAAAAGAAAGGGAAGAAGAGCAGCAAACAACAGAGTTAG 3402 0.4198 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLTPKTYVFKLMNSSGVTESGESEKVLLLIESGARLHTTIYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIIVFQFGLGENANYVILELYAQGNILLTDSNFVVMTLLRSHRDDDKGLAIMSRHRYPTESCRVFERTTVEKLLTALTSSKEDDADEAVKVDANGSDLSSVAKEKQGARKGGKSSATLKTVLGEALGYGPALSEHMILDAGLIPTAKVPKDKTWDDATIQALVQAVAKFEDWMQDIISGEIVPEGYILMQNRNLGKDSSISQSESVSQIYDEFCPILLNQFKSRDHTKFETFDAALDEFYSKIESQRSEQQQKAKENSAANKLNKIRNDQENRVHALRKEADHCVKMAELIEYNLEDVDAAILAVRVALAKGMNWDDLARMVKEEKKAGNPVAGLIDKLHLDRNCMTLLLANNLDEMDDDEKTLPVDKVEVDLALSAHANARRWYEQKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVATISHMRKVHWFEKFNWFISSENYLVISGCDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNHKPEQPVPPLTLNQTGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEETIDDHVEADPLEEISDSESEKDTADGKSAGGSERNDNLSVDSHKSPSEVFHADSSQASLATVNTETEVSRDFPVKETITTNIGDGEELSDISGNGLTSVTPQLEELIDRALGLGSVAKSSTNYGVENSQIDSGSEQHFEQNKPSVRDKPYISKAERRKVKKEQKYGEADSSVEHGKDEPKLKDISANLPEKEVQNLNTCGGKKTSRGQRGKLKKIKEKYADQDEEERRIRMTLLASSGKAIKKEETSSGNEALDKGKKPSTGPSDAPKICYKCKKVGHLSRDCKEKLLPGHAIDEAEQNPNMSASTTSPADRVAMEEDDINEIGEEEKEKLNDVDYLTGIPLPNDILLYAVPVCAPYNAVQSYKYRVKIIPGTVKKGKAAKTAMNLFSHMPDATNREKELMKACTDPELVAALVGNVKISAAGLTQLKQKQKKGKKSSKQQS* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2752 1133 MobiDBLite consensus disorder prediction 887 907 - -
Lja6g2752 1133 Pfam NFACT protein RNA binding domain 541 652 IPR008532 -
Lja6g2752 1133 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1121 - -
Lja6g2752 1133 SUPERFAMILY Retrovirus zinc finger-like domains 952 977 IPR036875 GO:0003676|GO:0008270
Lja6g2752 1133 MobiDBLite consensus disorder prediction 831 871 - -
Lja6g2752 1133 SMART c2hcfinal6 960 976 IPR001878 GO:0003676|GO:0008270
Lja6g2752 1133 Pfam NFACT protein C-terminal domain 1018 1111 IPR021846 -
Lja6g2752 1133 Gene3D - 953 991 - -
Lja6g2752 1133 MobiDBLite consensus disorder prediction 931 955 - -
Lja6g2752 1133 ProSiteProfiles Zinc finger CCHC-type profile. 961 976 IPR001878 GO:0003676|GO:0008270
Lja6g2752 1133 MobiDBLite consensus disorder prediction 815 871 - -
Lja6g2752 1133 PANTHER - 3 1121 - -
Lja6g2752 1133 MobiDBLite consensus disorder prediction 683 757 - -
Lja6g2752 1133 MobiDBLite consensus disorder prediction 695 710 - -
Lja6g2752 1133 MobiDBLite consensus disorder prediction 740 757 - -
Lja6g2752 1133 Pfam Zinc knuckle 960 976 IPR001878 GO:0003676|GO:0008270
Lja6g2752 1133 Pfam NFACT N-terminal and middle domains 218 531 - -
Lja6g2752 1133 Pfam NFACT N-terminal and middle domains 10 182 - -
Lja6g2752 1133 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Lja6g2752 1133 MobiDBLite consensus disorder prediction 815 830 - -
Lja6g2752 1133 Coils Coil 364 384 - -
Lja6g2752 1133 MobiDBLite consensus disorder prediction 982 1004 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2752 K24971 - gmx:100807437 1879.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2752 6 56551403 56565442 Lja6g2752 6 56551403 56565442 ECH