Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2751 ATGGCAATGGCATCTGTGGCTCAGCAATTGAGTGCTGTTCGGTGGTCTCCAATGCTATGGAGGCGGAGCCAGAAGCAGAGGCGCGGTGCTGGTACCATCGTCTGTTCGGTTGCAATCTCGAACGCACAGAACAAAGAGAGAGCCAAGCTCAAACAGCTCTTTGAAGATGCTTACGAGAGGTGCCGCACTGCTCCTACAGATGGTGTTTCCTTCACCCTCGAGCAGTTCACTACCGCTCTCGAGAAGTATGACTTCGATGCTGAGATTGGGACCAAGGTTAAGGGCACTGTGTTTGGTACTGATGCCAGTGGAGCTTATGTTGATATTACTGCAAAGTCTACGGCATACTTGCCCCTCCAAGAGGCATGCATCCACAAAATTAAGCATGTTGAAGAAGCAGGTTTAGTTCCAGGCGTGAGAGACGAATTTGTAATCATTGGTGAAAATGAATCTGATGATACCTTGTTCTTGAGTTTAAAGTCTATTCAGTTTGGGCTTGCATGGGAACGCTGTAGACAGCTTCAGGCTGAAGATGCTGTTGTCAAGGGTAAAATTGTTAATGCAAACAAAGGTGGTGTGGTGGCTGAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTCTCACAGATATCAACGAAATCGACTGGAGAAGAGCTTCTTGAGAAGGAGATTCCTCTAAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTCATCCTCAGTCACCGGAAAGCTGTGGCCGACAGCCAGGGACAGCTAGGAATTGGATCAGTAGTCACCGGATCTGTGCAAAGCCTAAAGCCATATGGTGCCTTCATCGACATTGGTGGGATCAGCGGCCTCCTTCACGTCAGTCAGATCAGTCATGATCGTATAACTGATATTTCAACTGTTCTTCAACCCGGTGACATTCTGAAGGTGATGATATTAAGTCATGATCGGGAGAGAGGCCGAGTAAGTCTTTCAACAAAGAAGTTAGAACCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAAGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACTCTCAGCAGTGATGGGATCTTAGGACCACTTGGTTCAGACTTACCTGCAGAGGGGCTTGATCTGAGTGATGAAGTATCCCTACCTGAGTGA 1215 0.4782 MAMASVAQQLSAVRWSPMLWRRSQKQRRGAGTIVCSVAISNAQNKERAKLKQLFEDAYERCRTAPTDGVSFTLEQFTTALEKYDFDAEIGTKVKGTVFGTDASGAYVDITAKSTAYLPLQEACIHKIKHVEEAGLVPGVRDEFVIIGENESDDTLFLSLKSIQFGLAWERCRQLQAEDAVVKGKIVNANKGGVVAEVEGLKGFVPFSQISTKSTGEELLEKEIPLKFVEVDEEQSRLILSHRKAVADSQGQLGIGSVVTGSVQSLKPYGAFIDIGGISGLLHVSQISHDRITDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSDLPAEGLDLSDEVSLPE* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2751 404 Gene3D - 73 170 IPR012340 -
Lja6g2751 404 SUPERFAMILY Nucleic acid-binding proteins 83 185 IPR012340 -
Lja6g2751 404 Pfam S1 RNA binding domain 254 323 IPR003029 GO:0003676
Lja6g2751 404 Pfam S1 RNA binding domain 176 242 IPR003029 GO:0003676
Lja6g2751 404 SUPERFAMILY Nucleic acid-binding proteins 173 246 IPR012340 -
Lja6g2751 404 CDD S1_RPS1_repeat_hs4 255 323 - -
Lja6g2751 404 ProSiteProfiles S1 domain profile. 178 242 IPR003029 GO:0003676
Lja6g2751 404 SUPERFAMILY Nucleic acid-binding proteins 254 333 IPR012340 -
Lja6g2751 404 ProSiteProfiles S1 domain profile. 255 323 IPR003029 GO:0003676
Lja6g2751 404 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 34 398 - -
Lja6g2751 404 Gene3D - 171 249 IPR012340 -
Lja6g2751 404 PANTHER 30S RIBOSOMAL PROTEIN S1 34 398 - -
Lja6g2751 404 Gene3D - 250 327 IPR012340 -
Lja6g2751 404 Coils Coil 340 360 - -
Lja6g2751 404 ProSiteProfiles S1 domain profile. 90 160 IPR003029 GO:0003676
Lja6g2751 404 SMART S1_6 88 160 IPR022967 -
Lja6g2751 404 SMART S1_6 253 323 IPR022967 -
Lja6g2751 404 SMART S1_6 176 242 IPR022967 -
Lja6g2751 404 CDD S1_RPS1_repeat_ec2_hs2 178 242 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2751 K02945 - gmx:100806905 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2751 6 56547443 56550599 Lja6g2751 6 56547443 56550599 ECH